| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_3590 |
|---|
| Symbol | gltD |
|---|
| ID | 6282069 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | - |
|---|
| Start bp | 4028233 |
|---|
| End bp | 4029702 |
|---|
| Gene Length | 1470 bp |
|---|
| Protein Length | 489 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642623170 |
|---|
| Product | glutamate synthase subunit beta |
|---|
| Protein accession | YP_001897204 |
|---|
| Protein GI | 187925562 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases |
|---|
| TIGRFAM ID | [TIGR01317] glutamate synthases, NADH/NADPH, small subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.633224 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.00000356893 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGGCAAGG CAACCGGTTT TCTCGAGTTC GAGCGCCGCC ACGAGGCGTA CGAAGCTCCG
CTCACGCGTG TGAAGCACTA CAAGGAATTC GTCGCCGCAC TGACCGACGA CGAAGCGAAG
ATTCAAGGCG CACGTTGCAT GGACTGCGGC ATTCCGTTCT GCAACAACGG CTGCCCGGTG
AACAACATCA TCCCGGACTT CAACGACCTG GTGTTCCATC AGGACTGGAA GAACGCGATT
GAAGTGCTGC ACTCCACGAA CAACTTCCCC GAGTTCACGG GCCGCATTTG CCCGGCACCG
TGCGAAGCGG CGTGCACGCT CGGCATCAAT GACGACCCGG TCGGCATCAA GTCGATCGAA
CACGCGATCA TCGACAAAGC CTGGGCCGAA GGCTGGGTTG CGCCGCAGCC GCCGAAGCAC
AAGACCGGCA AGAAGGTCGC CGTGGTCGGT TCCGGCCCCG CTGGTTTGGC CGTCGCGCAG
CAACTCGCGC GCGCGGGGCA CGATGTCACC GTGTTCGAAA AGAACGACCG CATCGGTGGT
TTGCTGCGTT ATGGCATTCC CGACTTCAAG CTGGAGAAGT GGCTGATCGA TCGCCGCATG
CGTCAGATGG AAGCCGAAGG CGTGACGTTC CGCGCGGGCG TGTTCATCGG CCGCGCGGAT
TCGCTGCCGG CACATATCGG CAACACGGCG AAGGAAACCG TTTCGCCGGA GCAACTGAAG
GAAGAGTTCG ACGCCGTGGT GATCGCCGGC GGTTCGGAAA CGCCGCGCGA TCTGCCGGTG
CCGGGCCGCG AGCTGGAAGG GATCCACTAT GCGATGGAAT TCCTGCCCCA GCAGAACAAG
GTCAATGCCG GCGACAAGGT CGCGAACCAG TTGCTCGCGA AGGGCAAGCA TGTGGTCGTG
ATCGGCGGCG GCGATACGGG TTCGGACTGC GTGGGCACGT CGAATCGTCA TGGCGCGAAG
AGCGTCACGC AATTCGAACT GCTGCCGCAG CCGCCGGAAG AGGAAAACAA GCCGCTCGTG
TGGCCGTACT GGCCGATCAA GCTGCGCACG TCGTCGTCGC ATGACGAAGG CTGCTCGCGT
GACTGGGCGG TCGCGACCAA GCGCCTCGAA GGCAAGAACG GCAAGGTCGA GAAGCTGATC
GCGGCGCGCG TCGAATGGAA GGACGGCAAG ATGCAGGAAG TGCCGGGTTC CGAATTCGAA
ATGAAGGCCG ATCTGGTGCT GCTCGCCATG GGCTTCACGC AACCGGTGTC GCCGGTGCTC
GAAGCGTTCG GTGTCGACAA GGATAATCGC GGCAACGTGC GCGCCTCGAC CGAAGGTGAG
AAGGCGTATT ACACCTCGGT GGACAAGGTG TTTACCGCGG GCGACATGCG CCGCGGTCAA
TCGCTGGTGG TGTGGGCGAT TCGTGAAGGC CGTCAGTGCG CGCGTTCGGT TGATGCGTTC
CTGATGGGCC ATTCGGAACT GCCGCGTTAA
|
|---|
| Protein sequence | MGKATGFLEF ERRHEAYEAP LTRVKHYKEF VAALTDDEAK IQGARCMDCG IPFCNNGCPV
NNIIPDFNDL VFHQDWKNAI EVLHSTNNFP EFTGRICPAP CEAACTLGIN DDPVGIKSIE
HAIIDKAWAE GWVAPQPPKH KTGKKVAVVG SGPAGLAVAQ QLARAGHDVT VFEKNDRIGG
LLRYGIPDFK LEKWLIDRRM RQMEAEGVTF RAGVFIGRAD SLPAHIGNTA KETVSPEQLK
EEFDAVVIAG GSETPRDLPV PGRELEGIHY AMEFLPQQNK VNAGDKVANQ LLAKGKHVVV
IGGGDTGSDC VGTSNRHGAK SVTQFELLPQ PPEEENKPLV WPYWPIKLRT SSSHDEGCSR
DWAVATKRLE GKNGKVEKLI AARVEWKDGK MQEVPGSEFE MKADLVLLAM GFTQPVSPVL
EAFGVDKDNR GNVRASTEGE KAYYTSVDKV FTAGDMRRGQ SLVVWAIREG RQCARSVDAF
LMGHSELPR
|
|---|
| |