| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_3575 |
|---|
| Symbol | |
|---|
| ID | 6281081 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | - |
|---|
| Start bp | 4012971 |
|---|
| End bp | 4014101 |
|---|
| Gene Length | 1131 bp |
|---|
| Protein Length | 376 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 642623155 |
|---|
| Product | FAD dependent oxidoreductase |
|---|
| Protein accession | YP_001897189 |
|---|
| Protein GI | 187925547 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | [TIGR02352] glycine oxidase ThiO |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.747856 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.00000218413 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACTCGTT CTGCACAACC CGATTTCGCC GTGCTCGGCG GTGGCCTGTG CGGGCGGCTT
GTCGCGTGGC GTCTCGCCGG ACAGGGGCAT CGCGTGGCGC TTTATGAGCG TGGCGATGCC
GCCGGTACAC AATCGGCCGC GTGGGTCGCC GCAGCGATGC TGGCACCGCT CGCGGAAGCC
GCCAGCGCGG AACTGCTGAT CACGCGCCTC GGCGCGAGTT CGCTCGAGAC GTGGCCGCAA
GTGCTGGCTG AGTTGCCTGA GCCGGTGTTC TATCAACGCA ATGGCACGCT GGTCGTGTGG
CATCACTCGG ATCGAACCGA AGCGCCGCTG TTCGAACGCC GGGTGCGTTC GAATGCGCCC
GCTGAACTGC TGAACGGCGG CTTCGTCACG CTGGCAGGCG CGCAGCTCGG CGCCGCCGAG
CCTGCTTTGG CAGGCCGCTT TAACCAGGGT TGGCTGCTGC CGCGTGAAGG CCAGCTGGAT
AACCGCCAGG TGCTCACAGC GCTGGCCGCA GGCCTCGCGC AACGCGGCGT CGACGCTCAT
TGGAACACGC CGGTCGACGA GCGTGCGCTG CCGCCCGCCC GCATCACGAT CGACTGCCGC
GGCCTCGGCG CGAAGCCCGT GCTGCCCACG CTGCGCGGCA TTCGTGGCGA AGTCGCGCGC
GTGCATGCGC CCGGTATCAA GCTGACGCGG CCGGTGCGGC TGCTGCATCC ACGCTATCCC
CTCTACATCG CGCCGAAGCA GGACGATCTC TACGTGATCG GCGCCACCGA AGTGGAAGGC
GAGGATATGT CGCCGGTCAG CGTACGCTCC GCGCTTGAGC TGCTGAGCGC GGCGTTTTCC
GTGCATCCCG GCTTCGGCGA GGCACGCATT CTCGAACTGA ATTCGCAGTG CCGCCCAACT
TTGCCGGACC ACCGTCCGGC GTTGCTGTGG GACGGCGCGC AGACATTGCG CGTGAACGGC
CTGTACCGGC ACGGCTACAT GATCGTGCCC GAAGTCGCCG ACGAAGCCGT GCGCTTCGCC
GCGGCGCTGC TCGACGGCCG CATCGGCGAC GCCGATGCCT TCGCCGACTG GCAGCGCGAC
GCGCGCTGGA GCGAGCTCTT TCAACTGGAT TCCGCGCGGG AGCCGGCATG A
|
|---|
| Protein sequence | MTRSAQPDFA VLGGGLCGRL VAWRLAGQGH RVALYERGDA AGTQSAAWVA AAMLAPLAEA
ASAELLITRL GASSLETWPQ VLAELPEPVF YQRNGTLVVW HHSDRTEAPL FERRVRSNAP
AELLNGGFVT LAGAQLGAAE PALAGRFNQG WLLPREGQLD NRQVLTALAA GLAQRGVDAH
WNTPVDERAL PPARITIDCR GLGAKPVLPT LRGIRGEVAR VHAPGIKLTR PVRLLHPRYP
LYIAPKQDDL YVIGATEVEG EDMSPVSVRS ALELLSAAFS VHPGFGEARI LELNSQCRPT
LPDHRPALLW DGAQTLRVNG LYRHGYMIVP EVADEAVRFA AALLDGRIGD ADAFADWQRD
ARWSELFQLD SAREPA
|
|---|
| |