| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_3474 |
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| Symbol | |
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| ID | 6282833 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | - |
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| Start bp | 3909139 |
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| End bp | 3910566 |
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| Gene Length | 1428 bp |
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| Protein Length | 475 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642623048 |
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| Product | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase |
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| Protein accession | YP_001897088 |
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| Protein GI | 187925446 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
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| TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.215707 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.0264559 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCGGC ATGGAGATGC TATGTTCTCG CTGCGTGAAG CCGCCGCGCT GATCTCCGGC
GCAACCGTTA TCGGCGACGA ATACGTCACA TTCGAACGCG TCTCGACCGA CAGCCGCAGC
GCGGGCCCCG GCGATCTGTT CGTCGCGATC AAGGGCGACC GGTTCGACGC TCACGACTTT
CTGCCGGACG TCGCCGCGCG CAACGTGACG GCCGTTCTCA TCACGCGCAC GCCGCAAGAC
TGGACTGTGC CGGCGCTCAA AGTCACGGAC ACGCGCGTGG GTCTCGGCGC GCTCGCACGC
GGCTGGCGCC GCAAGTTCAG CATGCCGCTC GTCGCCGTGA CGGGCAGCAA TGGCAAGACC
ACGGTCAAGG AAATGATCGC GTCGATCTTC GCCGCCGCGG TCGGCGCCGA CGCGCGTCTC
GCGACCGCGG GCAACTTCAA CAACGACATC GGCTTGCCGC TCACGCTGTT CCGTCTGCAC
GCAGCACATC AATTGGCGGT AGTCGAACTG GGCATGAACC ATCCGGGCGA AACCTTGGAG
CTCGCGAAAA TCGCTGAGCC GACGGTCGCC GTGGTGAACA ACGCGCAGCG CGAGCATCAG
GAATTCATGG CGACGGTCGA AGCGGTCGCG CTCGAACATG CGAGCGTGAT TCACGCGCTG
ACGCCGGAAG GCGTCGCGGT GTTCCCCGCC GACGACGCCT ACGCGAGCAT CTGGCGCGTG
GCCGCAACCG GCAGCCGCAT CATGGATTTC GCACTGAACT CCGCCGAGCG CATCACCGAG
GCGGCGGTGA AAGGCACGTT CGCCGGCAAC GTCCTGAGCA TCGACACGCC GGAAGGCCAG
ATCGAAGTCA CGCTGCAAGT GCTCGGCGAC CACAATGCGC ACAACGCACT GGCCGCAACG
TCGGCAGCTT TGGCAGCGGG CGTGTCGCTC GACGCCATCA AGCGCGGCCT CGAATCGTTC
GGCGCCGTGA AAGGCCGTTT GCAGGTGAAG CAAGCTGTGC TCGGCACGCT CGCCGGCGCC
ACCGTCATCG ACGACACCTA TAACGCCAAC CCCGATTCGA TGCGCGCCGC GATCGACGTG
CTCGCCTCAC GTGCCGCGCC GCGCGTGCTG GTGATGGGCG ACATGGGCGA AGTCGGCGAC
AACGGTCCGG CGTTCCACCG CGAAATTGGC GCTTACGCCA AGGAGCGCGG TATCGACGCG
CTGTACGCAA TGGGCGACGC CTCGCGCGAC GCCTGTACCG CGTATGGCGC GAGCGCGCAT
CACGTCGCCG ACATCGGCAC GCTGGTCGCG CAATTGCAGC AGGCCGGTTT CGGTTCTACT
GCAACGCTTC TCGTGAAAGG CTCGCGCTTC ATGCAGATGG AGCGCGTGGT GGACGCCGTA
ACGAGTCCAC AACCCAACGC AGCGGGCAGT ACGCCCGCCG CACATTGA
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| Protein sequence | MNRHGDAMFS LREAAALISG ATVIGDEYVT FERVSTDSRS AGPGDLFVAI KGDRFDAHDF
LPDVAARNVT AVLITRTPQD WTVPALKVTD TRVGLGALAR GWRRKFSMPL VAVTGSNGKT
TVKEMIASIF AAAVGADARL ATAGNFNNDI GLPLTLFRLH AAHQLAVVEL GMNHPGETLE
LAKIAEPTVA VVNNAQREHQ EFMATVEAVA LEHASVIHAL TPEGVAVFPA DDAYASIWRV
AATGSRIMDF ALNSAERITE AAVKGTFAGN VLSIDTPEGQ IEVTLQVLGD HNAHNALAAT
SAALAAGVSL DAIKRGLESF GAVKGRLQVK QAVLGTLAGA TVIDDTYNAN PDSMRAAIDV
LASRAAPRVL VMGDMGEVGD NGPAFHREIG AYAKERGIDA LYAMGDASRD ACTAYGASAH
HVADIGTLVA QLQQAGFGST ATLLVKGSRF MQMERVVDAV TSPQPNAAGS TPAAH
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