| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_3468 |
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| Symbol | ddl |
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| ID | 6282827 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | - |
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| Start bp | 3901679 |
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| End bp | 3902620 |
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| Gene Length | 942 bp |
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| Protein Length | 313 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642623042 |
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| Product | D-alanine--D-alanine ligase |
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| Protein accession | YP_001897082 |
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| Protein GI | 187925440 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
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| TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.00570253 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.00196625 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCAGTA TTGACCCGAA ACAATTCGGC AAGGTGGCAG TACTCCTCGG CGGCAATTCC
GCCGAGCGCG AGGTATCGCT CAACTCCGGC CGCCTGGTAC TGCAAGGTCT GCGCGACGCC
GGCGTGGACG CGCATCCGTT CGACCCGGCC GAGCGTCCGC TCGCCGCGTT GAAGGAAGAA
GGCTTCGTGC GCGCGTTCAA CGCGCTGCAT GGCGGCTACG GCGAGAACGG CCAGATTCAG
GGTGCGCTCG ACTTTTACGG CATCAAGTAC ACGGGTAGCG GCGTGCTCGG CTCGGCGCTC
GGTCTGGATA AATTCCGCAC CAAGCTCGTG TGGCAGCAAC TCGGCATTCC GACGCCGCCG
TTCGAAGCCG TGTTGCGCGG CGACGACTAC GAAGCGCGCT CGAAAGAGAT CGTCGCGAAG
CTCGGCTTGC CGCTTTTCGT GAAGCCGGCG AGCGAAGGTT CGAGCGTCGC GGTGATCAAG
GTGAAGAGCG CCGACGCATT GCCGGCCGCG CTGATCGAAG CGGTCAAGTA CGACAAGATC
GTGGTGGTGG AAAAGAGCGT TGAAGGCGGC GGCGAATACA CCGCTTGCAT CGCAGGCAAT
CTGGATCTGC CGGTGATCCG CATCGTGCCG GCCGGCGAGT TTTACGACTA TCACGCGAAG
TACATCGCGA ACGACACGCA GTACCTGATC CCGTGCGGTT TGGCGGCGGA CGAGGAAGCT
CGCCTGAAAG TGCTCGCGCG CCGTGCGTTC GACGTGCTTG GCTGCACCGA CTGGGGCCGC
GCGGATTTCA TGCTCGACGC CGACGGCAAC CCGTATTTCC TCGAAGTGAA CACGGCGCCC
GGCATGACCG ATCACTCGCT GCCGCCGAAA GCGGCGCGCG CGGTGGGCAT CAGCTATCAG
GAACTGGTTG TCGGCGTATT GGCGCTGACG TTGCAGGACT AA
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| Protein sequence | MSSIDPKQFG KVAVLLGGNS AEREVSLNSG RLVLQGLRDA GVDAHPFDPA ERPLAALKEE
GFVRAFNALH GGYGENGQIQ GALDFYGIKY TGSGVLGSAL GLDKFRTKLV WQQLGIPTPP
FEAVLRGDDY EARSKEIVAK LGLPLFVKPA SEGSSVAVIK VKSADALPAA LIEAVKYDKI
VVVEKSVEGG GEYTACIAGN LDLPVIRIVP AGEFYDYHAK YIANDTQYLI PCGLAADEEA
RLKVLARRAF DVLGCTDWGR ADFMLDADGN PYFLEVNTAP GMTDHSLPPK AARAVGISYQ
ELVVGVLALT LQD
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