Gene Bphyt_3236 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_3236 
Symbol 
ID6283530 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010681 
Strand
Start bp3645098 
End bp3646051 
Gene Length954 bp 
Protein Length317 aa 
Translation table11 
GC content61% 
IMG OID642622809 
Productperiplasmic binding protein/LacI transcriptional regulator 
Protein accessionYP_001896851 
Protein GI187925209 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1879] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.382931 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGCAAT CCCTTTCGAA GCCGACCTCG TTGAAGACTT TCGCACGCAG CACGGCGGCA 
CTGGCGACGC TCGCTTTCGG CTTGTCGTTC ATCGCCGCGC CGGCTGCGCA AGCCGCGCCG
CTGAAAATCG GCATGACGTT TCAGGAGCTG AACAACCCGT ACTTCGTGAC GATGCAAAAA
GCGCTGAACG ACGCGGCTGC TTCCATCGGC GCAACGGTTG TCGTCACCGA CGCGCACCAC
GATGTCAGCA AGCAGGTTAG CGACGTGGAA GACATGCTGC AGAAGAAGAT CGACATCCTG
CTCGTGAATC CGACCGATTC GACCGGCATC CAGTCGGCGG TGACCTCGGC GAAGAAAGCC
GGCGTGGTGG TGGTCGCCGT CGATGCGAAC GCCAACGGTC CGGTCGATTC GTTCGTCGGT
TCGAAGAACT ACGACGCGGG CGAGATGGCT TGCGAGTATC TGGCGAAGTC GATTGGCGGC
AGCGGTGAAG TGGCGATTCT CGACGGCATT CCGGTCGTGC CGATTCTCGA ACGCGTGCGG
GGCTGCAAGG CGGCGCTCGC GAAAGCGCCC GGCGTGAAGC TCGTGGATAC GCAGAACGGT
AAGCAGGAAC GCGCAACCGC GTTGTCCGTC ACCGAGAACA TGATTCAGGC GCATCCGAAT
CTGAAGGGCG TGTTCAGCGT GAACGACGGC GGCTCGATGG GTGCGCTCTC GGCGATCGAA
TCGTCGGGCA AGGACATCAA GCTGACCAGC GTCGACGGCG CGCCGGAAGC GATTGCCGCG
ATCCAGAAGC CGAATTCGAA GTTCGTCGAA ACGTCCGCGC AATTCCCGGC CGACCAGGTG
CGCATTGCAC TCGGCATCGC GCTCGCGAAG AAGTGGGGCG CCAATGTGCC GAAGACCATT
CCTGTCGACG TGAAGATGAT CGACAAGAGC AATGCCAAGG GTTTCAGCTG GTAA
 
Protein sequence
MTQSLSKPTS LKTFARSTAA LATLAFGLSF IAAPAAQAAP LKIGMTFQEL NNPYFVTMQK 
ALNDAAASIG ATVVVTDAHH DVSKQVSDVE DMLQKKIDIL LVNPTDSTGI QSAVTSAKKA
GVVVVAVDAN ANGPVDSFVG SKNYDAGEMA CEYLAKSIGG SGEVAILDGI PVVPILERVR
GCKAALAKAP GVKLVDTQNG KQERATALSV TENMIQAHPN LKGVFSVNDG GSMGALSAIE
SSGKDIKLTS VDGAPEAIAA IQKPNSKFVE TSAQFPADQV RIALGIALAK KWGANVPKTI
PVDVKMIDKS NAKGFSW