| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_3182 |
|---|
| Symbol | |
|---|
| ID | 6282455 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | + |
|---|
| Start bp | 3586438 |
|---|
| End bp | 3587184 |
|---|
| Gene Length | 747 bp |
|---|
| Protein Length | 248 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642622756 |
|---|
| Product | transcriptional regulator, GntR family |
|---|
| Protein accession | YP_001896798 |
|---|
| Protein GI | 187925156 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2188] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.659988 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.001615 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACCTCTG CCTCGGAAGA CCGCTGGCGC GACCTGCGCC CGGACCCGGA AAACGACACG
CCGCTATATC TGCAACTGGC TCGCAAGCTT GGCGCGGCCA TCCACGAGAA CCGCTGGAAC
GCGGGCGAGG CGCTGCCTTC GGAGCGTGTG CTCTCCGAGG CGCTCGGCGT ATCGCGCATC
ACGTCACGCA AGGCGATTGC CTTGCTGGTC GAGCAGGGTT TGATTCGACG CACCCAGGGC
GCGGGCAGTT TCATCACACC ACGCTACGAA GATCCGCTGT CGCGTCTGTC GAGCTTTAGC
GAAATGCTGC GGCGGCGTGG ATTCACGCCG AGTTCGAAGT GGCTGTCGCG CGAAATTTTG
CCGGCTAATC GCGACGAGGT GATTCAGCTC GGTTTATCGC CGGCGGCGGC GGTGACGCGA
TTGCGCCGCT TGCGCATGGC CGACGGCATT GTAATGGCGG TCGAGAATTC CACCTTCCCC
GCCGCAGTGA TTCCCGATCC TCAGGCGATT GGCGATTCGC TCTACACGTA CCTGGAGAAT
CGTGGACTGA CGATTGTCCG CGCGTTGCAG CATTTTCGCG CGGTGAATGC GAGCGAGGAA
ATCGCGCAGC AAATGAGCAT CGCGCCGAAC GAGGCGTTGC TGTTGATCAC GCGTGTGGGC
TACACCGCCG ATCAGCGCGC GATCGAGTTG ACCGACACGT ACTGCCGTAA CGATTACTAC
GACTTCGTGG CGGAGTTGAG GAAGTAG
|
|---|
| Protein sequence | MTSASEDRWR DLRPDPENDT PLYLQLARKL GAAIHENRWN AGEALPSERV LSEALGVSRI
TSRKAIALLV EQGLIRRTQG AGSFITPRYE DPLSRLSSFS EMLRRRGFTP SSKWLSREIL
PANRDEVIQL GLSPAAAVTR LRRLRMADGI VMAVENSTFP AAVIPDPQAI GDSLYTYLEN
RGLTIVRALQ HFRAVNASEE IAQQMSIAPN EALLLITRVG YTADQRAIEL TDTYCRNDYY
DFVAELRK
|
|---|
| |