| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_3083 |
|---|
| Symbol | |
|---|
| ID | 6281315 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | - |
|---|
| Start bp | 3476561 |
|---|
| End bp | 3478918 |
|---|
| Gene Length | 2358 bp |
|---|
| Protein Length | 785 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642622654 |
|---|
| Product | (p)ppGpp synthetase I, SpoT/RelA |
|---|
| Protein accession | YP_001896699 |
|---|
| Protein GI | 187925057 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
|---|
| TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.140424 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGCTA CCCCGCCCAC CGCCACGGAA GTGGAACACG ACGCCGACTC GCCCTCGTCT
GCACGGAAAT ACATCGACGC GGTCCTCGAA CAGTCGTTTC GCCATCTGTT CGGGCCGACC
GCCACGCCGG AGCAACCGCG CCGGCATGAC GTCGTCTCCA TCGCCAAACT GACGTCCGTC
TTGTCCGGCT ATCTGCAGCC GGAAGAGATC AAGGACATCA AGTCGGCCTT CCATTTCAGC
GACGAAGCCC ACCTCGGCCA GTACCGCCAG AGCGGCGAGC CGTACATCAC GCATCCAGTT
GCCGTCGCGG AAATCTGCGC CGGCTGGAAT CTCGACGCCC AGGCGCTCAT GGCGGCGCTG
CTGCACGACG TGATGGAAGA CCAGGGCGTG ACCAAGGCCG AACTCGCCGA GCGTTTTGGC
GCGAAGGTCG CCGAACTGGT CGACGGTTTG TCGAAGCTGG ACAAGATGGA GTTTCGTAAT
CGCGAAGAGG CGCAGGCGGA AAACTTCCGC AAGATGCTGC TCGCGATGGC GCGCGACGTC
CGCGTGATTC TGGTCAAGCT CGCCGACCGG CTGCACAACA TGCGCACGCT GGGCGCGGTG
CCGCCGGAAA AGCGCCGCCG CGTGGCGCGC GAAACGCTGG ATATCTATGC GCCGATCGCT
CACCGGCTCG GCCTGAACAA TACGTATCGC GAACTGCAGG ACCTGAGCTT CGCGAACTTC
AACCCGCATC GGTACGCCAC GCTCGAAAAA GCCGTCAAGG CGGCGCGCGG CAACCGGCGC
GAAGTGGTCG GCAAGATTCT CGAATCGGTG CAGCGCGCCA TTGCCGACGC GAAGCTCGAC
GCCGAAGTCA CCGGCCGCGA GAAAACCATC TTCAGCATTT ACAAGAAGAT GCGTGACAAG
CAGCTGTCGT TCTCGCAAGT GCTCGACGTG TACGGCTTCC GTGTCGTGGT CGAGAGCGCG
CTGGAATGCT ACACCTGCAT CGGCGCGCTG CATGCGCTGT ACAAACCCGT GCCGGGCAAG
TTCAAGGATT ACATCGCGAT CCCGAAGGTG AACGGCTATC AATCGCTGCA CACCACGCTG
GTCGGCCCGT TTGGCGCGCC GATCGAGTTC CAGGTGCGCA CGCGCAAGAT GCACGAGATC
GCTGAGGCGG GCGTGGCCGC GCATTGGCTG TACAAGAACG GCGGCGCGGA CCTGAACGAC
GTGCAGAAGC GCGCGCACCA GTGGCTGAAA TCGCTGCTCG ACATTCAGAG CGAAGCGGGC
GATTCGAGCG AATTCCTCGA ACACGTCAAG ATCGATCTGT TCCCCGACGC GGTCTACGTG
TTTACGCCGA AGTCGAAGAT CATGGCGCTG CCGCGCGGCG CCACGGCGCT CGACTTCGCG
TATTCGATCC ACAGCGACCT GGGCAACCAG TGCGTCGCGG TGAAGATCAA CAATGAACTG
CTGCCGCTGC GCACCGAGTT GAAGAGCGGC GATATCGTCG AAGTCATCAC GGCACCTTAT
TCGAAACCGA ATCCGGCGTG GCTGGGTTTC GTGCGCACGG GCAAGGCGCG GTCGGCGATC
CGCCATTACC TGAAGACGAT GCGATTGAAC GAGTCCGTGC AGCTGGGCGA GCGTCTCGTC
GACCAGGCGT TGAAGGGCTA CGGGTTCGCG CTGTCCGACG TGACGCCGGA AGCGTGGGAA
AAGCTCGTTC AGTGGACCGG CAACAAGAAC CGTCAGGAAA TTTTCGCGGA CATCGGTTTG
GGCCGGCGTG TCGCGGCGGT CATGGCCAAG CGCATCGAAG TGTTGATGAG CGGTCGCGAC
GCCGACGACG ACGGTTCGCG CTCCCACTCC GATCTGCCGC ATGCGCCGCC GGTGGTTATC
ACCGGGACCG AGGGCATGTC GGTGCAACTG TCCGCGTGCT GCCGTCCGAT TCCGGGCGAC
GACATCATGG GCTATATCGG TATCGGCCTC GGTATGGCGA TCCACACCAC GGATTGCCGC
GTCGCGCAAC GAATCCACCG TCGCGATCCG GGCCGCTGGA TCGACGTCGC CTGGGCGCCG
CAGCCAGGGC GTCTGTTCGA CGTCGCCGTG AAGGTGCTGG TCAAGAACAC CAAGGGCGTG
TTTGCCCGCG TGGCGGCGGA TATCACCTCA GCGGATGCCA ATATCGTCCA CATTGCAATG
GACGAAGACC TGTCGCAGGA ATCCACGGTG TTGCGCTTCG TGATCCAGGT TAGCGACCGC
GTCCATCTGG CCAATGTCAT GCGTCGGGTG CGCACTAACC CCGATGTCAT GCGCATCGCG
CGTGAACGGC CTAGCGAGGA CGGCCATCAC CGTCACGACG GCGGGATGCG CATCGACCGC
GAGCGTGCGG ATTACTGA
|
|---|
| Protein sequence | MSATPPTATE VEHDADSPSS ARKYIDAVLE QSFRHLFGPT ATPEQPRRHD VVSIAKLTSV
LSGYLQPEEI KDIKSAFHFS DEAHLGQYRQ SGEPYITHPV AVAEICAGWN LDAQALMAAL
LHDVMEDQGV TKAELAERFG AKVAELVDGL SKLDKMEFRN REEAQAENFR KMLLAMARDV
RVILVKLADR LHNMRTLGAV PPEKRRRVAR ETLDIYAPIA HRLGLNNTYR ELQDLSFANF
NPHRYATLEK AVKAARGNRR EVVGKILESV QRAIADAKLD AEVTGREKTI FSIYKKMRDK
QLSFSQVLDV YGFRVVVESA LECYTCIGAL HALYKPVPGK FKDYIAIPKV NGYQSLHTTL
VGPFGAPIEF QVRTRKMHEI AEAGVAAHWL YKNGGADLND VQKRAHQWLK SLLDIQSEAG
DSSEFLEHVK IDLFPDAVYV FTPKSKIMAL PRGATALDFA YSIHSDLGNQ CVAVKINNEL
LPLRTELKSG DIVEVITAPY SKPNPAWLGF VRTGKARSAI RHYLKTMRLN ESVQLGERLV
DQALKGYGFA LSDVTPEAWE KLVQWTGNKN RQEIFADIGL GRRVAAVMAK RIEVLMSGRD
ADDDGSRSHS DLPHAPPVVI TGTEGMSVQL SACCRPIPGD DIMGYIGIGL GMAIHTTDCR
VAQRIHRRDP GRWIDVAWAP QPGRLFDVAV KVLVKNTKGV FARVAADITS ADANIVHIAM
DEDLSQESTV LRFVIQVSDR VHLANVMRRV RTNPDVMRIA RERPSEDGHH RHDGGMRIDR
ERADY
|
|---|
| |