Gene Bphyt_3028 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_3028 
Symbol 
ID6282085 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010681 
Strand
Start bp3414995 
End bp3416857 
Gene Length1863 bp 
Protein Length620 aa 
Translation table11 
GC content68% 
IMG OID642622596 
ProductTPR repeat-containing protein 
Protein accessionYP_001896644 
Protein GI187925002 
COG category[R] General function prediction only 
COG ID[COG0457] FOG: TPR repeat 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.985806 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.0142271 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCATCCC CCGTCATGCA ACCTGTATTT GACCGCGCTT TTGCGGCGCA TCGTGACGGC 
CGCCTCGACG ACGCCGAACG CGGCTACCGC GCGACGCTCG ACGGCAATCC CGCGCACGTC
GATGCGTTGC ACCTGCTGGG CGTCCTGCGC CACCAGCAGG GCCAGCACGC CGAAGCCGCC
GAGCTCGTGC GGCGCGCAGT GAACCTGCGT CCGGAAGACG CCGCGCTGCA ACTGAACCTG
GGCAACGCGC TGAAAGCGCT GGGCCAGATC GACGACGCCA TCGAACAGTT CCGCAACGCG
CTGACGCTCG CGCCGTCGTT CCCGATGGCG CACTACAACC TCGGCAATGC CTACGCCGCC
GCGGGCCGTC ATGAAGACGC CGCCGATGCG TTCGAAAAGT CGTTGCGGCT GCAACCGGAC
GACGCTTCGT CGCACAACAA CTTCGGCAAT GCGCTGCATG CGCTCGGGCG CCATACGGAA
GCCATCGCCG CGTTCCGGCG CACGATCGAA CTGCGTCCCG GACACGCCGG CGCGCTCAAT
AACATGGGCA TGTCGCTGAA CGCGCTCGGC CGCGCGGAAG AAGCGATCCC GTGTTTCCAG
ACGGCGTTGG CGGCCGAACC GCGCTTCGTC GCCGCGCACT TCAATCTCGC CAACACCTTC
GACGCCACCG GCCGCCATGC CGAAGCCGTC GCGTCGTTCA AGGCGGCGCT GGCTTTGCAG
CCGAACCTGC CGCCGGCGAT CTTCGGCATG GGTAACGCGC TCGCGGCATT GGGACGCCAC
GCCGAGGCGC TGCCGTATCT GGAACGCGCC GTCGGTCTCG ATCCGCAATT CGCGCTCGCG
TGGCTGAGTC TGGGCACCGC GCATCAGGCG CTGGGCGCGC ATGGCCCCGC CGTGCGTGCG
CTGGATCAGG CGCTGCGTCT GCGTCCCGAT CTTGCCTCCG CGCATATGAA CCGCGCACTC
GCGTGGCTCG CGCAGCGCGA TTTCGCGCGC GGGCTGCCGG AGTACGAATG GCGCCTGCAA
ACCATGGCGC AGCCGGTGAT CCAGACGCTG CCGCGCTGGC ACGGCGAGCC GATCGCCGAA
CGTACGCTGC TGGTTCACGC CGAGCAGGGT TTCGGCGATA CGCTGCAATT CGTGCGCTTC
GTCCCGCTGG TTGCGCAGCG TGCGGCGCGC GTCGTACTCG AAGTGCAGCC GCAACTGCTG
CCCTTGCTGG CCCCGGCCGC GCAGGCCTGG CGCGTGACGC TGATCGCCCA GGGCGCGCCG
CGTCCCGCCG CCGACCTGCA CTGTCCGCTG CTGAGCCTGC CGCTCGCACT CGGCACGACC
TTCGACACCA TTCCGCAGCG CACGCCCTAT CTCAGCGTGC CGGCCGCCTA CGGCCGCAAA
TGGCGCGGCT CGCTCGGCGG CCAGGCCAAG CGCAAGATCG GCATCGCGTG GTCGGGACGC
ATCCAGCAAA ACGAAACGCG TTCGATGCAG CTTGCCGCGC TCGATCCGTT GTTCGCACTC
GAAGGCATCG ATTGGATCGT GCTGCAGCCC GAGTTGAGCG CCGAGGAACG CATGGCGCTC
GACACGCATC CGCGCGCGGC GTCGATTCAT CGCTTCGACA AGCGGATCGG CGACTTCGCG
GACACGGCGG CGATCATCGA ACGGCTCGAC GCGGTGGTGT CGATCGATAC ATCTATCGCG
CACGTTGCCG GCGCGCTGCG CAAGCCGCTG TGGTTGATGC TGCCGTTCGC GGCGGATTGG
CGCTGGTTTG CCGGCGAAAC AGGCAGCCCT TGGTATCCGG GCGCAACGCT GGTGCGTCAG
CCGCAGCCCG GCGCGTGGGG GGATGTCGTC GAGGCCGTGG CGAACGCGTT GCGCAAGGGT
TAG
 
Protein sequence
MPSPVMQPVF DRAFAAHRDG RLDDAERGYR ATLDGNPAHV DALHLLGVLR HQQGQHAEAA 
ELVRRAVNLR PEDAALQLNL GNALKALGQI DDAIEQFRNA LTLAPSFPMA HYNLGNAYAA
AGRHEDAADA FEKSLRLQPD DASSHNNFGN ALHALGRHTE AIAAFRRTIE LRPGHAGALN
NMGMSLNALG RAEEAIPCFQ TALAAEPRFV AAHFNLANTF DATGRHAEAV ASFKAALALQ
PNLPPAIFGM GNALAALGRH AEALPYLERA VGLDPQFALA WLSLGTAHQA LGAHGPAVRA
LDQALRLRPD LASAHMNRAL AWLAQRDFAR GLPEYEWRLQ TMAQPVIQTL PRWHGEPIAE
RTLLVHAEQG FGDTLQFVRF VPLVAQRAAR VVLEVQPQLL PLLAPAAQAW RVTLIAQGAP
RPAADLHCPL LSLPLALGTT FDTIPQRTPY LSVPAAYGRK WRGSLGGQAK RKIGIAWSGR
IQQNETRSMQ LAALDPLFAL EGIDWIVLQP ELSAEERMAL DTHPRAASIH RFDKRIGDFA
DTAAIIERLD AVVSIDTSIA HVAGALRKPL WLMLPFAADW RWFAGETGSP WYPGATLVRQ
PQPGAWGDVV EAVANALRKG