| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_2789 |
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| Symbol | |
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| ID | 6283370 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | - |
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| Start bp | 3147786 |
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| End bp | 3149714 |
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| Gene Length | 1929 bp |
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| Protein Length | 642 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642622351 |
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| Product | type VI secretion protein, VC_A0110 family |
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| Protein accession | YP_001896407 |
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| Protein GI | 187924765 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3519] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03359] type VI secretion protein, VC_A0110 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.1276 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAAGC CGCATCGATC TCTTACAGAC CCGGAACTGC TCGACTACTA CACGGGCGAA
CTGCTCTATA TGCGGGAACT GGCGCAGGAG TTCGCGGAAC AGCATCCAAA GGTGGCAAAG
CGCCTCGGCA TGCATGCAGG CGAGACGGCT GATCCCTACG TCGAGCGGTT GCTCCAGGCG
TCGTCGTTCG TGACCGCACG CATGCGGATG CGCCTTGATA CGGCGTTTCC CGAACTGATG
CAGCCGCTGC TGGAGACGGT TTATCCGAAC TATGTCCGGC AGACTCCGTC TATCAGCGTG
GCCCGCCTGT ACCCGGGTCA CGAAAGCGGC CACCTCGGCC AGGGATTTCT TATTCCGCGC
GGCACGGCCT TTACATCACG CCCGCCTGAG GGGGAGAAAA CACCGTGCGT GTTCCGCAGC
AGCCAGGACG TGACAGTCTA TCCGCTGCGA ATCAATCTTG CGCGGGTCAC GCTGGTTCCA
TCCGACATAC CCTCCCTTGA CTTCTACGTG CCGGACGGCC AGCCGGTGCA TGGCGCGTTG
CGCCTCACGC TGGAAACGAC CAACGGTACC TCAATTGCCA GTCTCGGGGA GCTGGCGCGG
CTCCCGGTGT ATCTCACCGG CGATGAGCGC ACCGCATCGC ACCTGTTCGA ACTGCTCCAC
ACTTCGAGCG TCGCTACCGT CATGGCGGCG CCAGGTCGGT TCACGGAGGG ACGGCTGTAC
GGAGTGACGC GTGGTGCGGT CGTTCACGAG GGACTTGACC CGCAGCAGGC GGTGCTGCCC
GACGTGCCGC GCAGCCTGCA CGGACATGGT CTCGTGCAGG AATACTTCGC GTGTCCGGCG
CGCTTCTGGT TTTTTGCGCT GACGGGGCTG GCGCAGGGCC TGAGGGCAGT CGAGGGGAAT
GCCATCGAAA TCGTCATCCT GCTCAACCGC GCGCCCGGGG CGCTGCTAGA CGCGGTGGAT
GCGTCACATG TTGCGCTCTT TTGCACACCC GTCATCAACC TGTTTCCCTG GCGCACGAAG
CATCTCGAAA TCGACCCGGA GGATAGCGCT CCCCAGCGGC TTGTGCCGGT GCCGGACGCG
CCTGCCGACT TCGATCTGCG ATCGGTCGAT GTCGCGCATG GCCAGGTTTC GGAGGACGAC
AGCGATGACG TGCGGTTCAA GCCTTGGGAC GGATCGTTTG AAGAGCGCGA CGCCAGCGCA
GGACATTACT TCTCTCTGCG CCGCGAGTTG TGCCGAAACA CGGGCAGCGA GCGGCAGTAC
GGCACACGCC GCCCCTTCAC CGAAACGCAG ACGTTCATCT CGCTCGTGAA TGGCGAGGGC
CGGTCCAATG AAAGCCGCAT CCGTTCCCTG TCGCTCGATG CGTGGCTCAC CAACCGCGAC
CTGCCCTCGC TGCTCGACTG CAATGGCCGG GACGACCTCA CGCTCGACGG ATCGAAGCCG
GTGGCCAGCG TGGGACTGGT GCGTGCACCG TCAGCGCCGA AGTCGCCCCT CGCCCGCCAC
GATCTCGCCT GGCAACTGAT GAGCCAGTTA AATCTCAATT ATGGAATGTT CGACGACCGA
TGCGGCGATC ACGACATCGA GCCACATTCC GGCGACGGAG TACGTCGCCG CCTGCGGCTC
TATGTGACGC CGGATGCGGG TGTTCTGGCG CGGCAAGTCG AGTGCCTGTT GAGCGCCACG
GCGACGCCGG TCAACCGTAA GTTGCCGGGC GACGGCCCAT TCGTTTTCGG ACGCTGCATT
GAGTGCTGCT TCACCTTCGA TGAAAGCGGT TTCGATGGCG TGAGCCCCTA CACCCTCGCG
CTGGTGCTGG AGCACTACGT CGCGCGGCAT GTCTCCACGC ACTCGTTCAC GACCACCGTG
CTGTATTCAA AGCAGCGTGG CCGCATCGCG AGCTGGCCAC CGCGACGGGG CACGCGCGGC
GTGTTCTGA
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| Protein sequence | MTKPHRSLTD PELLDYYTGE LLYMRELAQE FAEQHPKVAK RLGMHAGETA DPYVERLLQA
SSFVTARMRM RLDTAFPELM QPLLETVYPN YVRQTPSISV ARLYPGHESG HLGQGFLIPR
GTAFTSRPPE GEKTPCVFRS SQDVTVYPLR INLARVTLVP SDIPSLDFYV PDGQPVHGAL
RLTLETTNGT SIASLGELAR LPVYLTGDER TASHLFELLH TSSVATVMAA PGRFTEGRLY
GVTRGAVVHE GLDPQQAVLP DVPRSLHGHG LVQEYFACPA RFWFFALTGL AQGLRAVEGN
AIEIVILLNR APGALLDAVD ASHVALFCTP VINLFPWRTK HLEIDPEDSA PQRLVPVPDA
PADFDLRSVD VAHGQVSEDD SDDVRFKPWD GSFEERDASA GHYFSLRREL CRNTGSERQY
GTRRPFTETQ TFISLVNGEG RSNESRIRSL SLDAWLTNRD LPSLLDCNGR DDLTLDGSKP
VASVGLVRAP SAPKSPLARH DLAWQLMSQL NLNYGMFDDR CGDHDIEPHS GDGVRRRLRL
YVTPDAGVLA RQVECLLSAT ATPVNRKLPG DGPFVFGRCI ECCFTFDESG FDGVSPYTLA
LVLEHYVARH VSTHSFTTTV LYSKQRGRIA SWPPRRGTRG VF
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