| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_2621 |
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| Symbol | |
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| ID | 6281189 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | + |
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| Start bp | 2962368 |
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| End bp | 2965001 |
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| Gene Length | 2634 bp |
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| Protein Length | 877 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 642622181 |
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| Product | YadA domain protein |
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| Protein accession | YP_001896240 |
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| Protein GI | 187924598 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport
[W] Extracellular structures |
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| COG ID | [COG5295] Autotransporter adhesin |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.171767 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.911362 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATAGCA ACAACCCACT GGTTTGGTGT GAAGCGACGA CAATGTCGGC GGCAACGGCA
AGATTAAAGA CAAAGCGCAG AAAGGTCATC ACGCGCGCAG TGCTGATTCT GGTGGCACTG
GCAGGGGGCG CGCCGGCGGC GCAGGCCGCC CTCTTCGTAG ATACGAGCGT CAATTCCCCC
GGGAGCGATG TCTTCGCATC TGCGGTGGGC CCAGGCGCGA TTGCGATCGG CATCGGTGCA
ATCGCAGGGG GCCCCTACGC AATCGCGACA GGCTTTCAGT CCGGTGCGCA GGGCTACATG
TCGATTGCAA CCGGCGTTCA GGCTCAGGCA TCCGGCGACA AATCGCTTGC AATGGGCGTG
CAGGCGACAA CCGCAGCTGC CGCCCTCTAC GGAATCGCAA TCGGCGATCA GGCCTTCGCC
AGCGGGGTGG GGGCCACGGC GTTTGGCTCA GGCGCACGGG CTAGCAACCT GAACTCGGTC
GCTATCGGCT ATGCGGCGTC AGCCACGGTC GCCAACAGTG TCGCACTCGG CGCGAACTCG
ACCACCACCG CGAATCTCAG CCAGCCCGGC GAGGAATTCG GCACGAGCGG CGTGGTCGAG
GCGACAGCGG CCCTCGGCGA GGTCTCCGTT GGCTCGCCAG GCAAAGAGCG CCGCCTGACT
AACGTTGCAG CGGGCGCGGC GGCGACCGAC GCCGTCAACC TGAGCCAGTT GAGTGCGGTC
GATGGCAAGG TCGGCACGCT TGCGCAAAGC GGCACGCAGC ACTACTTCAA GGCCGACGGC
ACCGCCGACG GCACGGACGA TGCCGTCGCA AGCGGCACGC ATGCGGTCGC AACAGGGGTG
CTCGCAAACG CCTCAGGCGA CTACGGCACG GCGCTCGGCA CCAACTCCGC CGCGACGGGA
ACAGGCGCCG CCGCGCTCGG CGCGTATGCA TCGGCAACGT CGGCCGGCAG CATCGCATTG
GGTTACAACG CCGTTGCCGG CAATGTCGAT TCAATTGCGA TAGGCCACGA CGCGGACGCG
TCCGCTGACG GCTCCGTCGC CCTGGGCCAG GGTTCGGTCG CCGACCGCGC GAACACCATC
TCCGTCGGCT CGGCCGGCAA GGAGCGCCAG ATCGCCAACG TCGCGGCCGG CACCCAGGCA
ACCGACGCCG TCAACCTGAG CCAATTGCAG GCAGCCAGCG CGACCGCCTC GCGCTACTTC
AAGGCAAACG GTCTGAACAC CGGCAACGAC GACGCTGCGG CCACCGGCGA CAACGCGGTC
GCCGTCGGCA GTTCGGCGCT TGCGGCGGGA CAAGCCGCGT CGGCCATCGG CACGAGTTCG
CAGGCGAGCG GCGATTTCGC CACGGCGGTC GGCGGGTTCG CCAACGCGCA GGGCAACGGC
TCCACCGCGC TGGGCTATCG GGCAAGCGCC CTCGTCGACA ACTCCGTTGC GCTAGGCTAC
GAGGCGAGCG CAGCAGGCGC GAACTCAACC GCTCTCGGTT ACCAGGCCAG CGCAGTGGCC
GATAACTCCG TAGCGCTAGG CTACCAGGCC GGCGCAGCGG GCGTGAACTC CACCGCTCTC
GGCTATCAGG CCCGCGCCTC TGCGGAGAAC TCTGTCGCCT TGGGGCAAGG ATCGATCGCC
GACCGTGCGA GCACCGTCTC GGTCGGCTCC GTCGGCAACG AGCGCCAGAT CACGAACGTC
GCAGCCGGCA CTGCCGACAC CGACGCCGTC AACGTCGCGC AGCTCAAAGC GGTGAGCGAT
CAAGGTGCCG CCAATGCCGC CAAGCTCGAC GGCGCGGTGA TGTACGACCA GAACGCCGAC
GGCAGCGTCA ACCGGAACAG CGTGACGCTC GGCGGCGACG CCGCCAACGG CGGCACGGCG
ATCCACAACG TCGCGGCGGG CGTGGACGGC ACCGACGCGG TCAACGTCGA TCAGCTGAAC
GCGGCCATCG CGGGCGCGGT CAACAACGTC GTGGTCAACT CGGGCAATCC GTTCTTCAGC
GCGGAAGGCG ATCGCGATAC TCAAGGCGCC CTGTCGTCCG GTACGCAGTC CGTGGCCGCG
GGCGCCAACG CTCGGGCAAC CGGCACCGAC GCGGTCGCCA TCGGCGCCAA CTCGCTGGCG
AGCGGCGCGA ACGCCACCTC GCTCGGCGCG AACTCCATCG CCAGCGGCGC CAATGCCACC
GCGCTCGGCG CGGCGGCAAA CGCCACCGCC AGCAACTCCG TCGCGTTGGG GCAAGGCTCG
ATCGCGGACC GCGCCAACAC CGTCTCCGTC GGCGCGGCAG GCCAAGAACG CCAGATCACC
AATGTCGCAG CCGGCGTGCA AGGCACCGAC GCGGTCAACG TGAGCCAGTT GCAGCAAAGC
GTGGGTGGAG CGCTCAGCCA GGCGAACAGC TATACCGACG ACCAGATCCG CTCGGCCCGT
CGCGATGGTT ACGGCGGCAC GGCGTCCGCC ATGGCAATGG CCGGCTTGCC GCAGGCGATT
CTGCCGGGTC GCGGCATGGT CGCGATGGCC GGCGGTACCT ATGCCGGCCA GTCGGCGTTG
GCCATCGGCG TATCGCAAAT CTCGGAAACG GGGAAGTGGG TCTACAAGCT GCAAGGCACC
ACGGATTCGC GCGGCCAGTT CGGCGCGGCA GTCGGCGCCG GCATGCACTG GTAA
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| Protein sequence | MNSNNPLVWC EATTMSAATA RLKTKRRKVI TRAVLILVAL AGGAPAAQAA LFVDTSVNSP
GSDVFASAVG PGAIAIGIGA IAGGPYAIAT GFQSGAQGYM SIATGVQAQA SGDKSLAMGV
QATTAAAALY GIAIGDQAFA SGVGATAFGS GARASNLNSV AIGYAASATV ANSVALGANS
TTTANLSQPG EEFGTSGVVE ATAALGEVSV GSPGKERRLT NVAAGAAATD AVNLSQLSAV
DGKVGTLAQS GTQHYFKADG TADGTDDAVA SGTHAVATGV LANASGDYGT ALGTNSAATG
TGAAALGAYA SATSAGSIAL GYNAVAGNVD SIAIGHDADA SADGSVALGQ GSVADRANTI
SVGSAGKERQ IANVAAGTQA TDAVNLSQLQ AASATASRYF KANGLNTGND DAAATGDNAV
AVGSSALAAG QAASAIGTSS QASGDFATAV GGFANAQGNG STALGYRASA LVDNSVALGY
EASAAGANST ALGYQASAVA DNSVALGYQA GAAGVNSTAL GYQARASAEN SVALGQGSIA
DRASTVSVGS VGNERQITNV AAGTADTDAV NVAQLKAVSD QGAANAAKLD GAVMYDQNAD
GSVNRNSVTL GGDAANGGTA IHNVAAGVDG TDAVNVDQLN AAIAGAVNNV VVNSGNPFFS
AEGDRDTQGA LSSGTQSVAA GANARATGTD AVAIGANSLA SGANATSLGA NSIASGANAT
ALGAAANATA SNSVALGQGS IADRANTVSV GAAGQERQIT NVAAGVQGTD AVNVSQLQQS
VGGALSQANS YTDDQIRSAR RDGYGGTASA MAMAGLPQAI LPGRGMVAMA GGTYAGQSAL
AIGVSQISET GKWVYKLQGT TDSRGQFGAA VGAGMHW
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