| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_2497 |
|---|
| Symbol | |
|---|
| ID | 6283564 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | - |
|---|
| Start bp | 2818714 |
|---|
| End bp | 2819379 |
|---|
| Gene Length | 666 bp |
|---|
| Protein Length | 221 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642622056 |
|---|
| Product | NLP/P60 protein |
|---|
| Protein accession | YP_001896117 |
|---|
| Protein GI | 187924475 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0791] Cell wall-associated hydrolases (invasion-associated proteins) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00000164638 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.0130851 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCACA GAAACCTAAC CCAGGCTTGC ACGCGCGTCG TCGCCGGGAT GTTCATTGGC
GTCTTGATGG CAGCAGCTCC CGGCGCGTTC GCCGACGAAG TAAGCAGTTT CAATCAGAAT
GCCTCATATT CGACCCTCAA CGGGTCGAAT TCTTTGTCCG CTCCCAGTTC GCAAACCACC
GCTCCAGCTA GCGACAGCGG CGCCAAATCG TTCCTCTCCG GCATGGCCGG CAAGGCGGGC
GACGTGGTCG TCGGCGCGCT GAACATGATC GGCGTGCGCT ACCGCTGGGG TGGCAACACC
CCGGATTCGG GGCTCGACTG CAGCGGCTTC GTGCGCTATG TGTTCCAGGA CACGCTCGGT
ATGGCGCTGC CGCGCCGGGC CGAGGAAATG AGCCGCGTCG GCGAAAAGGT GCGCGTGAGC
GACCTGAAGC CGGGCGATCT GGTGTTCTTC AACACCATGC GCCGCACGTT CTCGCACGTC
GGCATCTATA TCGGCGACAA CAAGTTCGTG CACTCGCCCT CCACGGGCAG CACGATCCGT
GTCGACGACA TGGATGACGG CTACTGGGAA AAGCGCTTCA CCGGCGCGCG TCGGATCGAG
ACGTCGTATC AGGACGGCGA GGATCTGCGC AAGCGCGTGA ACGCGACGAT CGGCGGCAAT
CAGTAA
|
|---|
| Protein sequence | MQHRNLTQAC TRVVAGMFIG VLMAAAPGAF ADEVSSFNQN ASYSTLNGSN SLSAPSSQTT
APASDSGAKS FLSGMAGKAG DVVVGALNMI GVRYRWGGNT PDSGLDCSGF VRYVFQDTLG
MALPRRAEEM SRVGEKVRVS DLKPGDLVFF NTMRRTFSHV GIYIGDNKFV HSPSTGSTIR
VDDMDDGYWE KRFTGARRIE TSYQDGEDLR KRVNATIGGN Q
|
|---|
| |