| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_2488 |
|---|
| Symbol | |
|---|
| ID | 6284294 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | - |
|---|
| Start bp | 2808325 |
|---|
| End bp | 2809227 |
|---|
| Gene Length | 903 bp |
|---|
| Protein Length | 300 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642622042 |
|---|
| Product | transcriptional regulator, LysR family |
|---|
| Protein accession | YP_001896108 |
|---|
| Protein GI | 187924466 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0585408 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.000785028 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGACCGTT TCAAGCAGAT CGAAACTTTC GTGACCGTCG CGGCCAAAGG CAGCCTGTCC
GCCGCGGCTT CGGCCGAAGG CGTCGCGCCC GCCATCATCG GACGGCGCAT CGACGCGCTC
GAAGAACGTC TCGGCGTCAA GCTGCTGGTG CGCACCACGC GCAAGATCAC GCTGACCTTC
GAAGGTTCGG CCTTCCTGGA GGATTGCCAG CGCATCATTC ACGACATGCA GAACGCCGAA
GCCAGTGTGT CGGCGGGGGG TGTCAAGGCG AGTGGCCACT TGCGGCTGTC CGCGCCGGCG
GGCTTCGGCC GGCGGCACGT CGCGCCGCTG GTGCCGGCGT TCACGGTCGC GCATCCGGAC
GTGTCGATCA CGCTCGACCT GTCCGACCGC CTCGTCGATC TGGTCAACGA GGGTTTCGAC
TGCGCGGTGC GTCTCGGCGA GTTGCCGGAT TCGTCGCTGG TGTCGCTCAA GCTCGGCGAG
AACCGCCGTG TCTGCGTGGC GTCGCCGTCG TATCTGAGCC GGCGCGGCGC GCCGCACAGC
CTCGCCGATC TCGCGCATCA CAACTGTCTC GCGCTCGGCG CGAGCGCTAA TCAGCAACGT
GGCTGGATGT TCCAGCAGGG CGACAAAGTC GTGTCGATCA AGGTGTCCGG CACGATGGAA
TGCTCCGACG GCGCGGTGCT GCATGAATGG TGTCTCGAAG GCTACGGACT CGCGTGGCGC
TCGTGGTGGG AAGTCGGCAC GGACATCGCG GCCGGACGGC TCGTCAGCGT GCTCGACGAA
TTCGCCGCGC CGCCCATCGG CATTCACGCG GTGTTTCCGC AGCGCCGTCA TTTGCCGCTG
CGGGTGCGAT TGTTTCTGGA TTTTCTCAAG CATACGTATG GGCACCCTGA CTACTGGGGT
TGA
|
|---|
| Protein sequence | MDRFKQIETF VTVAAKGSLS AAASAEGVAP AIIGRRIDAL EERLGVKLLV RTTRKITLTF
EGSAFLEDCQ RIIHDMQNAE ASVSAGGVKA SGHLRLSAPA GFGRRHVAPL VPAFTVAHPD
VSITLDLSDR LVDLVNEGFD CAVRLGELPD SSLVSLKLGE NRRVCVASPS YLSRRGAPHS
LADLAHHNCL ALGASANQQR GWMFQQGDKV VSIKVSGTME CSDGAVLHEW CLEGYGLAWR
SWWEVGTDIA AGRLVSVLDE FAAPPIGIHA VFPQRRHLPL RVRLFLDFLK HTYGHPDYWG
|
|---|
| |