| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_2467 |
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| Symbol | dapD |
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| ID | 6283311 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | + |
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| Start bp | 2784038 |
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| End bp | 2784865 |
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| Gene Length | 828 bp |
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| Protein Length | 275 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642622021 |
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| Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
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| Protein accession | YP_001896087 |
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| Protein GI | 187924445 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
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| TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.784765 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.000110034 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCGCAAC AACTTCAGCA GATCATTGAC ACCGCCTGGG AAAATCGCGC CGAACTGTCG
CCCAAGGCCG CTCCGGCCGA CGTGCGCGAA GCCGTCGCCC ACGCCATCGA GCAACTGGAC
AAGGGCCTGC TCCGCGTCGC GGAAAAGAAG GACGGCGACT GGGTCGTCAA TCAGTGGCTG
AAGAAAGCCG TGCTGCTGTC GTTCCGCCTG GAAGACAACG CGCCGATGCC GGCTGGCGGT
TACAGCCAGT TCTACGACAA GGTGCCCTCG AAGTTCGCGA ACTACACCGC TGAAGACTTC
GCCGCCGGCG GCTTCCGCGT GGTGCCGCCC GCCATCGCGC GCCGCGGCTC GTTCATCGCG
AAGAACGTCG TGCTGATGCC GTCGTACACC AACATCGGCG CGTATGTCGA CGAAGGCTCG
ATGGTCGACA CGTGGGCCAC CGTCGGTTCG TGCGCGCAGA TCGGCAAGAA CGTGCACCTG
TCGGGTGGCG TGGGCATCGG CGGCGTGCTG GAGCCGCTGC AGGCGAACCC GGTCATCATC
GAAGACAACT GCTTTATCGG CGCGCGTTCG GAAGTGGTGG AAGGCGTGAT CGTCGAAGAA
AACTCGGTGA TCTCGATGGG CGTGTACCTC GGCCAGAGCA CCAAGATTTA CGACCGCGAA
ACCGGCGAAG TCACGTATGG CCGCATTCCG GCCGGCTCGG TGGTGGTGGC GGGCAACCTG
CCGTCGAAAG ATGGCACGCA TAGTCTCTAC TGCGCCGTGA TCGTCAAGAA GGTCGACGCC
AAGACGCGCG CGAAGGTCGG CCTGAACGAG CTGCTGCGAG GCGACTGA
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| Protein sequence | MSQQLQQIID TAWENRAELS PKAAPADVRE AVAHAIEQLD KGLLRVAEKK DGDWVVNQWL
KKAVLLSFRL EDNAPMPAGG YSQFYDKVPS KFANYTAEDF AAGGFRVVPP AIARRGSFIA
KNVVLMPSYT NIGAYVDEGS MVDTWATVGS CAQIGKNVHL SGGVGIGGVL EPLQANPVII
EDNCFIGARS EVVEGVIVEE NSVISMGVYL GQSTKIYDRE TGEVTYGRIP AGSVVVAGNL
PSKDGTHSLY CAVIVKKVDA KTRAKVGLNE LLRGD
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