| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_2049 |
|---|
| Symbol | |
|---|
| ID | 6282256 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | + |
|---|
| Start bp | 2316559 |
|---|
| End bp | 2317419 |
|---|
| Gene Length | 861 bp |
|---|
| Protein Length | 286 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642621614 |
|---|
| Product | short chain dehydrogenase |
|---|
| Protein accession | YP_001895680 |
|---|
| Protein GI | 187924038 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0000200632 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGTCGGCA AAACGAATTT GGGTGTGGCC CTTGTTACGG GCGCATCTTC AGGCATCGGA
CAGGCCGCCG CCGAGCGGCT GGCCGACGCC GGTTATACGG TCTTCGGCAC GAGCAGACGG
GCAGCCTATA CGGGGCAGCG ATCCTTCGAA ATGCTGACTC TTGACGTCAC CAGCGATGAA
TCCGTCGCGG CGGTGGTCAA CGAAGTCATA CGACGGGCGG GTCGCATCGA CTTGCTGGTG
AATAACGCTG GCTTTGGCGT GGCTCCGGCG GGCGCCGAAG AAAGCTCGAT CGAGCAGGCC
CGGTCGATCT TCGACACAAA CTTCTTTGGC GTCGTCCGCA TGACCCGCGC CGTCGTGCCC
TACATGCGGC ATCAGGGAAG CGGTCGCATC GTCAATATCG GCTCGGTGCT CGGCTTCTTG
CCGATGCCTT ACGGGGCGCT CTATGCGGCA ACGAAGCATG CGATTGAAGG ATATTCCGAG
TCGCTCGACC ATGAGCTGCG CACTTGGGGC ATACGTGTCT CGGTCATCGA GCCGGCTTAC
ACCAAGACGC CGTTCGATGC GAATTTCCTG GAACCCGATG CCAAGCTCGA TGCATACCGC
GAGGCTCGTG CGGTCGTCAG CAACCGTGTC AATGAGGTGA TGGCAACGGC TGCGGAGCCC
CGCGTCGTGG CCGACGTTGT GCTGAAGGCT GCAGTTGCGG CTCGTCCAAG ACTCCGGTAC
ACAGCGGGTG CGCTCGCGGG CCGTCTGCAA TTGCTGCGCA GATTCATGCC AGCGGGTCTG
GTGGACGCCG CGCTTCGGAA GGACCTGCGG CTCGGCATGA TACCGTCGCC GAGGTCTGGT
AAGCCAGTCC TGCAAAAATA G
|
|---|
| Protein sequence | MVGKTNLGVA LVTGASSGIG QAAAERLADA GYTVFGTSRR AAYTGQRSFE MLTLDVTSDE
SVAAVVNEVI RRAGRIDLLV NNAGFGVAPA GAEESSIEQA RSIFDTNFFG VVRMTRAVVP
YMRHQGSGRI VNIGSVLGFL PMPYGALYAA TKHAIEGYSE SLDHELRTWG IRVSVIEPAY
TKTPFDANFL EPDAKLDAYR EARAVVSNRV NEVMATAAEP RVVADVVLKA AVAARPRLRY
TAGALAGRLQ LLRRFMPAGL VDAALRKDLR LGMIPSPRSG KPVLQK
|
|---|
| |