| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_2021 |
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| Symbol | |
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| ID | 6284641 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | + |
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| Start bp | 2283831 |
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| End bp | 2285072 |
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| Gene Length | 1242 bp |
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| Protein Length | 413 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642621586 |
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| Product | secretion protein HlyD family protein |
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| Protein accession | YP_001895652 |
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| Protein GI | 187924010 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR00998] efflux pump membrane protein (multidrug resistance protein A) |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.0240231 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGACA CGATCAAAAC CAGCCGCACG GCGGCGGAAG CGGACCAACC CCTGCAAGCA
CAGGCTCCCA CGAAGCGCAA ACTGCTGCTT TCCCTGCTCG CCGCCACCGT CGTGCTGGCC
GGCGCGGGCT ACGGCGCGTA CTACTACACG AGCGGCCGCT ACTACCAGTC CACCGACGAC
GCCTACGTGA GCGGCAACCT CGTGCAACTG ACGCCGCAAG TGAGCGGCAC GGTGGTCGCG
GTCAACGCCG ACGACACGCA GATCGTCAAG CAGGGCGCGC CGGTCGTCAC CCTGGATAAC
GCCGACGCGA AGGTCGCGCT GTCGAACGCG GAAGCAACGC TTGGCCAGAC CGTGCGCCAG
GTGAGCGGTC TCTACGTGAA CAACGATTTC TACGCGGCGA CCGTCGCGCA ACGTCAGTCG
GATCTGGCTC GCGCCAACGA CGATCTGAAG CGCCGTCAGG CAGTGGCCGA AACGGGCGCT
GTGTCCGGCG AAGACATCGC CCATGCCCGC GACGCCGTCA GCTCCGCGCA GGCCGCGCTC
GACGCCGCGC GTCAGCAAGC CGAGGCCAAC CATGCGCTGA CCGACCGCAC GTCGATCGAA
CAGCACCCGA ACGTGCAGGC CGCGGCCTCG AAAGTGCGCG ACGCCTACCT GAGCTACGCG
CGCAACACGT TGCCTGCGCC CGTGACCGGC TACGTCGCGC GCCGTTCGGT GCAGGTCGGC
CAGCGCGTCG CGCCGGGCAC CCCGTTGATG GCGATCGTGC CGCTCGACGG CGTGTGGGTC
GACGCGAACT TCAAGGAAGG CCAACTGCGG CACATGCGCA TCGGGCAACC CGTCACGCTC
ACCGCGGACG TGTACGGTTC CAGCGTCAAG TATCACGGCC GGCTCGAAGG CTTTTCGGCG
GGCACGGGCG CGGCCTTCGC CTCACTGCCT GCGCAGAACG CCACCGGCAA CTGGATCAAG
GTCGTGCAGC GTCTGCCTGC GCGAATCCTG CTCGATCAGA ATGAATTGAA CGCGCACCCG
CTGCGCATTG GCCTGTCGAT GGACGTGGAA GTGGACACGC ACGAGGAAAC GGGCCCGCAA
CTCGGTGCGG CGATCAACAC CTCGTATCAC ACCGACGTAT TCGCGCAGTA CGGCGACGAA
GCCGACGCGG AGATCGCCCG GATCATCGAG CAGAACATGC CGGCGAAGCA CGAGCTGGCC
GCGAGCCCCA CGCAGAAAAG CACTGCACGC AAGGCCGGTT GA
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| Protein sequence | MSDTIKTSRT AAEADQPLQA QAPTKRKLLL SLLAATVVLA GAGYGAYYYT SGRYYQSTDD
AYVSGNLVQL TPQVSGTVVA VNADDTQIVK QGAPVVTLDN ADAKVALSNA EATLGQTVRQ
VSGLYVNNDF YAATVAQRQS DLARANDDLK RRQAVAETGA VSGEDIAHAR DAVSSAQAAL
DAARQQAEAN HALTDRTSIE QHPNVQAAAS KVRDAYLSYA RNTLPAPVTG YVARRSVQVG
QRVAPGTPLM AIVPLDGVWV DANFKEGQLR HMRIGQPVTL TADVYGSSVK YHGRLEGFSA
GTGAAFASLP AQNATGNWIK VVQRLPARIL LDQNELNAHP LRIGLSMDVE VDTHEETGPQ
LGAAINTSYH TDVFAQYGDE ADAEIARIIE QNMPAKHELA ASPTQKSTAR KAG
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