Gene Bphyt_1883 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_1883 
Symbol 
ID6284303 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010681 
Strand
Start bp2116270 
End bp2117148 
Gene Length879 bp 
Protein Length292 aa 
Translation table11 
GC content65% 
IMG OID642621446 
ProductSqualene/phytoene synthase 
Protein accessionYP_001895515 
Protein GI187923873 
COG category[I] Lipid transport and metabolism 
COG ID[COG1562] Phytoene/squalene synthetase 
TIGRFAM ID[TIGR03465] squalene synthase HpnD 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.0657917 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACGCAC GGCGTGCTCC CTCTTCGCCT GCCCTTCCCC ACATTCCCAA TCCCGTGAAT 
TTCGACGAAT ATTGCCAGCA GAAAGCGGCG CCCCCAGGAT CGAGTACTTA CTACGCGCTT
CGGCAGGCGC CCGCAGCGAG CCAGCCGCTG TTGACCGCGC TGTTCGCGCT GCGCCGCGAG
TTCGAGGAAA CGGTCAAGGA GACCAGCGAT CCGGCCATCG GCCGCACGAA ACTCGCGTGG
TGGCAAAACG AACTTGCCGC GCTGGCTGCG GGCACGCCGT CGCATCCGGT GTCCAAGGCG
CTGGCCGCCT ATCTGCCCGA TGTAAAGGCC GAATACCCGA TGCTGCAGGC GTTGCTCGCC
GGCTTCGAGA TGGATCTCGA CCAGGCGCGC TACCTCGACT ATCCGAATCT GCGGCGCTAT
GTGCAAGGCG TCGGCGGCAC GTTTGCGTCG CTGGTCGCGC GCGCCACGGC GAAAGATGCC
GCGCAGGCGT CGACCTGGTC CGCGGCGCTC GGCGAGGCGC TGCTGCTCGC GCAGTTCGTG
GTCGAAACAG GCAATGACGC GCGCCACGGT CGCATCTATA TTCCCATCGA CGAAATGCAG
CGCTTCAATG TGACCGCCGC GGATCTGATC AATCGAAAAT ATAGCGACGC GTTCACCGAG
TTAATGCGCT TCGAGACCAA ACGCGCCCGC GACGCGCTGC AGACCGCGCT CGGCGCCGTG
CCCGCCGGCG AGCGCCGCAC ACAGCGCACG CTCGTCGCGC AAGCTGCATT GGCGTTGGCC
TTGCTGGATG AAATCGAACG TGACGGCTAT CACGTTCTGC ATCAGCGCAT CGCGTTGACG
CCGATTCGCA AGCTTTGGAT CGCGTGGCGC GCGAAGTGA
 
Protein sequence
MHARRAPSSP ALPHIPNPVN FDEYCQQKAA PPGSSTYYAL RQAPAASQPL LTALFALRRE 
FEETVKETSD PAIGRTKLAW WQNELAALAA GTPSHPVSKA LAAYLPDVKA EYPMLQALLA
GFEMDLDQAR YLDYPNLRRY VQGVGGTFAS LVARATAKDA AQASTWSAAL GEALLLAQFV
VETGNDARHG RIYIPIDEMQ RFNVTAADLI NRKYSDAFTE LMRFETKRAR DALQTALGAV
PAGERRTQRT LVAQAALALA LLDEIERDGY HVLHQRIALT PIRKLWIAWR AK