Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_1883 |
Symbol | |
ID | 6284303 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010681 |
Strand | - |
Start bp | 2116270 |
End bp | 2117148 |
Gene Length | 879 bp |
Protein Length | 292 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 642621446 |
Product | Squalene/phytoene synthase |
Protein accession | YP_001895515 |
Protein GI | 187923873 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1562] Phytoene/squalene synthetase |
TIGRFAM ID | [TIGR03465] squalene synthase HpnD |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.0657917 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCACGCAC GGCGTGCTCC CTCTTCGCCT GCCCTTCCCC ACATTCCCAA TCCCGTGAAT TTCGACGAAT ATTGCCAGCA GAAAGCGGCG CCCCCAGGAT CGAGTACTTA CTACGCGCTT CGGCAGGCGC CCGCAGCGAG CCAGCCGCTG TTGACCGCGC TGTTCGCGCT GCGCCGCGAG TTCGAGGAAA CGGTCAAGGA GACCAGCGAT CCGGCCATCG GCCGCACGAA ACTCGCGTGG TGGCAAAACG AACTTGCCGC GCTGGCTGCG GGCACGCCGT CGCATCCGGT GTCCAAGGCG CTGGCCGCCT ATCTGCCCGA TGTAAAGGCC GAATACCCGA TGCTGCAGGC GTTGCTCGCC GGCTTCGAGA TGGATCTCGA CCAGGCGCGC TACCTCGACT ATCCGAATCT GCGGCGCTAT GTGCAAGGCG TCGGCGGCAC GTTTGCGTCG CTGGTCGCGC GCGCCACGGC GAAAGATGCC GCGCAGGCGT CGACCTGGTC CGCGGCGCTC GGCGAGGCGC TGCTGCTCGC GCAGTTCGTG GTCGAAACAG GCAATGACGC GCGCCACGGT CGCATCTATA TTCCCATCGA CGAAATGCAG CGCTTCAATG TGACCGCCGC GGATCTGATC AATCGAAAAT ATAGCGACGC GTTCACCGAG TTAATGCGCT TCGAGACCAA ACGCGCCCGC GACGCGCTGC AGACCGCGCT CGGCGCCGTG CCCGCCGGCG AGCGCCGCAC ACAGCGCACG CTCGTCGCGC AAGCTGCATT GGCGTTGGCC TTGCTGGATG AAATCGAACG TGACGGCTAT CACGTTCTGC ATCAGCGCAT CGCGTTGACG CCGATTCGCA AGCTTTGGAT CGCGTGGCGC GCGAAGTGA
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Protein sequence | MHARRAPSSP ALPHIPNPVN FDEYCQQKAA PPGSSTYYAL RQAPAASQPL LTALFALRRE FEETVKETSD PAIGRTKLAW WQNELAALAA GTPSHPVSKA LAAYLPDVKA EYPMLQALLA GFEMDLDQAR YLDYPNLRRY VQGVGGTFAS LVARATAKDA AQASTWSAAL GEALLLAQFV VETGNDARHG RIYIPIDEMQ RFNVTAADLI NRKYSDAFTE LMRFETKRAR DALQTALGAV PAGERRTQRT LVAQAALALA LLDEIERDGY HVLHQRIALT PIRKLWIAWR AK
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