Gene Bphyt_1875 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_1875 
SymbolispD 
ID6283397 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010681 
Strand
Start bp2108328 
End bp2109044 
Gene Length717 bp 
Protein Length238 aa 
Translation table11 
GC content69% 
IMG OID642621438 
Product2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 
Protein accessionYP_001895507 
Protein GI187923865 
COG category[I] Lipid transport and metabolism 
COG ID[COG1211] 4-diphosphocytidyl-2-methyl-D-erithritol synthase 
TIGRFAM ID[TIGR00453] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.116041 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.126714 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACTTCCC GTCTATTTGC CCTGATTCCG TGCGCTGGCA CCGGCAGCCG TTCCGGCGCC 
GCGATGCCCA AACAATATCG CACTGTCGCC GGCCGCGACA TGTTGCATTA CTCGCTGGCG
GCGTTCGACG CCTGCAGCGA GTTTGCGCAA ACTCTCGTGG TGATCGCTCC GGACGACGCT
CACTTCGACG GCCGCCGCTT CGGCGGCTTG CGTTTTGCCG TGCGCCGCAG CGGCGGAGCC
TCGCGTCAGG CGTCGGTGCT CAACGGCTTG CATGCGCTCG CCGAGTTCGG CGCGCGTGAC
GACGACTGGG TGCTGGTGCA CGACGCGGCG CGCCCCGGCA TCACGCCCGC GCTGATCCGC
ACGCTGATCG GCGCGCTGAA GGACGACCCG GTGGGCGGCA TCATGGCCTT GCCGGTGGCT
GACACGTTGA AGCGGATCGA CGCGACGTCA TCCGACGGCC GGATCGCCCG CACCGAGGCG
CGCGACGGCT TGTGGCAGGC GCAGACGCCG CAGATGTTCC GCATCGGCAT GCTGCGCGAG
GCGATCCTGC GCGCGCAGGC CGACGGGCAC GACCTGACGG ACGAAGCGAG CGCGATCGAG
TGGCTGGGCC ACGCGCCGAA GCTGGTGCAG GGCAGCTTGC GCAACTTCAA GGTGACGTAT
CCGGAAGACT TCGATCTGGC CGAGGCGATT CTGAGCCGGC CGGCGGCTGC GTCCTGA
 
Protein sequence
MTSRLFALIP CAGTGSRSGA AMPKQYRTVA GRDMLHYSLA AFDACSEFAQ TLVVIAPDDA 
HFDGRRFGGL RFAVRRSGGA SRQASVLNGL HALAEFGARD DDWVLVHDAA RPGITPALIR
TLIGALKDDP VGGIMALPVA DTLKRIDATS SDGRIARTEA RDGLWQAQTP QMFRIGMLRE
AILRAQADGH DLTDEASAIE WLGHAPKLVQ GSLRNFKVTY PEDFDLAEAI LSRPAAAS