Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_1875 |
Symbol | ispD |
ID | 6283397 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010681 |
Strand | + |
Start bp | 2108328 |
End bp | 2109044 |
Gene Length | 717 bp |
Protein Length | 238 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 642621438 |
Product | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
Protein accession | YP_001895507 |
Protein GI | 187923865 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1211] 4-diphosphocytidyl-2-methyl-D-erithritol synthase |
TIGRFAM ID | [TIGR00453] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.116041 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.126714 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACTTCCC GTCTATTTGC CCTGATTCCG TGCGCTGGCA CCGGCAGCCG TTCCGGCGCC GCGATGCCCA AACAATATCG CACTGTCGCC GGCCGCGACA TGTTGCATTA CTCGCTGGCG GCGTTCGACG CCTGCAGCGA GTTTGCGCAA ACTCTCGTGG TGATCGCTCC GGACGACGCT CACTTCGACG GCCGCCGCTT CGGCGGCTTG CGTTTTGCCG TGCGCCGCAG CGGCGGAGCC TCGCGTCAGG CGTCGGTGCT CAACGGCTTG CATGCGCTCG CCGAGTTCGG CGCGCGTGAC GACGACTGGG TGCTGGTGCA CGACGCGGCG CGCCCCGGCA TCACGCCCGC GCTGATCCGC ACGCTGATCG GCGCGCTGAA GGACGACCCG GTGGGCGGCA TCATGGCCTT GCCGGTGGCT GACACGTTGA AGCGGATCGA CGCGACGTCA TCCGACGGCC GGATCGCCCG CACCGAGGCG CGCGACGGCT TGTGGCAGGC GCAGACGCCG CAGATGTTCC GCATCGGCAT GCTGCGCGAG GCGATCCTGC GCGCGCAGGC CGACGGGCAC GACCTGACGG ACGAAGCGAG CGCGATCGAG TGGCTGGGCC ACGCGCCGAA GCTGGTGCAG GGCAGCTTGC GCAACTTCAA GGTGACGTAT CCGGAAGACT TCGATCTGGC CGAGGCGATT CTGAGCCGGC CGGCGGCTGC GTCCTGA
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Protein sequence | MTSRLFALIP CAGTGSRSGA AMPKQYRTVA GRDMLHYSLA AFDACSEFAQ TLVVIAPDDA HFDGRRFGGL RFAVRRSGGA SRQASVLNGL HALAEFGARD DDWVLVHDAA RPGITPALIR TLIGALKDDP VGGIMALPVA DTLKRIDATS SDGRIARTEA RDGLWQAQTP QMFRIGMLRE AILRAQADGH DLTDEASAIE WLGHAPKLVQ GSLRNFKVTY PEDFDLAEAI LSRPAAAS
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