| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_1871 |
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| Symbol | mscL |
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| ID | 6284112 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | - |
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| Start bp | 2101730 |
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| End bp | 2102176 |
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| Gene Length | 447 bp |
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| Protein Length | 148 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 642621434 |
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| Product | large-conductance mechanosensitive channel |
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| Protein accession | YP_001895503 |
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| Protein GI | 187923861 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1970] Large-conductance mechanosensitive channel |
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| TIGRFAM ID | [TIGR00220] large conductance mechanosensitive channel protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0110608 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.0250819 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGCATGG TCAAGGAATT CAAGGAATTT GCCCTCAAGG GCAACGTGAT GGATCTTGCA
GTCGGTGTGA TTATCGGCGG CGCGTTCTCC ACCATCGTCA ATTCAATTGT TAAAGACCTG
ATCATGCCGG TTGTCGGGCT TGCCACCGGC GGCCTCGATT TCTCCAACAA GTTCGTTCGC
CTCGGCCCCA TTCCGCCCAC TTTCAAGGGC AGCCCCGAGT CGTATAAAGA CTTGCAAACG
GCGGGCGTTG CCGTATTCGG TTACGGCTCG TTCATTACCG TGCTGATCAA CTTCCTGATT
CTCGCGTTCA TCATTTTCCT GATGGTCAAG TTCATCAACA ATCTGCGCAA ACCGGCTGAA
GCCGCGCCGG CAGCACCGCC GCCGCCCCCG GAAGACGTGC TGCTGCTGCG TGAAATCCGC
GATTCGTTGA AGAACTCACC GCGTTAA
|
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| Protein sequence | MSMVKEFKEF ALKGNVMDLA VGVIIGGAFS TIVNSIVKDL IMPVVGLATG GLDFSNKFVR
LGPIPPTFKG SPESYKDLQT AGVAVFGYGS FITVLINFLI LAFIIFLMVK FINNLRKPAE
AAPAAPPPPP EDVLLLREIR DSLKNSPR
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