| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_1858 |
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| Symbol | |
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| ID | 6284474 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | + |
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| Start bp | 2085683 |
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| End bp | 2088505 |
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| Gene Length | 2823 bp |
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| Protein Length | 940 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642621421 |
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| Product | DNA ligase D |
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| Protein accession | YP_001895490 |
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| Protein GI | 187923848 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.170046 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.216644 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGACC GACTCGATCT CTACAACCGC AAGCGCCGCT TCGACGACAC GCCGGAGCCG
GCGGGCACGC GCGCCAGGCG CAAACCAGCC GGCCGGAAAA CGACCCGCCA GGCAGCCGGC
GAGGCGCTCT CATACGTGAT CCAGGAACAC GACGCCCGGC GCTTGCACTA CGACTTCCGG
CTGGAACTGA ACGGCACACT CCTGTCGTGG GCGGTGCCCA AAGGGCCGAG CCTCGATCCC
TCGGTGAAAA GGCTGGCAGT GCATGTCGAG GATCATCCGG TCGAATACGG TTCGTTCGAA
GGGGAAATCC CGCCCGGCAA CTACGGTGCG GGCAGCGTGA TCGTGTGGGA TCGCGGCACC
TGGGAACCGG TTGGCGGCGC GGCGGAGGCG GCGCGTTCCT ACGCGGCCGG CAAACTCAAG
TTCCATTTGC ACGGCGAAAA GCTGCACGGC GGCTGGACAC TGGTGCGCAG CCATATGCGC
GGCAGCGGCG ACAAGGAGCA GTGGCTGCTG ATCAAGGAAC GCGACGACGA AGCGCGCGAT
GAGAGCGACT ACGACATTCT GAAGAAGCGC CCGGGCAGCG TGCTCAGCGG CAGCGCCTCG
GTGGCTAAAG GCGAAAAAAC GACGACAGCG GCATCTAAGA CCGCGCGCAA AACCGCGGCC
TCTGATGCGA AGTCCACCGC AAAACGAGGC GGCAAAAGCA GCGCGAAAGC CGCTTCATCC
ACCCGCGCGG ATCCCAGACG ACCGGATATC GTGGCGACGC GCAACACGCA GTCGCTACGC
GAACTCGCCG CCACGCCCTC GATCGAGGGC GCGGTGAAAG CTCGCTTGCC CACGACCTTC
AAACCGCAAC TGGCGACGCT CGTCGACGCC GCGCCGCCCG GCGACGAATG GTCGTACGAA
ATCAAGTTCG ACGGTTACCG CGTGCTGGCC CGAATCGATC GGGACGCGAA GGGGAGCGCC
GTCAAAGTAT TCACCCGCGC CGGCAACGAC TGGACCGCGA AATTCAGCAA ACAGGTCAAG
GCGTTCGAAC AGCTCGGAAT CGAAAGCGCG TGGCTCGACG GCGAAGCCGT GGTGCTGGAC
CCGAACGGCG TGCCGAATTT TCAGGCGCTG CAGAACGCTT TCGATGCGAA CCGGCCGCAA
GACATCATCG TCTACCTGTT CGATATACCG TTCCTGAACG GCTACGACCT GCGCGGCGTG
CCGCTCGAAC AGCGTCGCGC GATTCTGCAC GCTCTGATGG AAGACGTCGA CGATAGCGTG
CTGCGTTTCT CGAACAATTT CGACTTCAGC GCGGAAGACC TGCTCAGAAG CGCGTGCGAC
ATGGCGCTGG AAGGCATCAT CGGCAAGCGG CGCGATAGCG GCTATCTGTC GGGCCGTTCG
TCGACGTGGA TCAAGTTGAA ATGCCGCCGG CGTCAGGAGT TCGTGATAGG CGGCTATTCG
GAACCGTCCG GAAGTCGTGC GGCATTCGGC GCGCTGCTGC TCGGCGTCTA CGACAGCAAA
GGCAATTTGA ATTACGCGGG GCGCGTCGGC ACCGGCTTCG ACGCGGCGTT GCTGCGCTCG
GTCAAGAAAG AACTCGACGC GCACGCGACC AAGCGCATGC CGTTTGCGGC CGTGCCGCGC
GAGCGCAGCC GCACGCCGGT GCATTGGGTC GAACCGGTGC TCGTAGCCGA ATGCAATTTC
GCGGAATGGA CGAGTGACGG CATCGTGCGT CAGGCGTCGT TCGTGAGTTT GCGCAATGAC
AAGCCGGCGC GCCAGATCGT CAAGGAAACA CCTCGCCAGG GAGCCGACGT GCAACAGCAA
ACCGATTCCA TCTCCGACGA CGCGCCGAAG AAACGCGCGG CGCGGAAAAC TTCTGGTAGT
AACGTGGCCG CAGCCGGAAA AACCACAGCC GCCAAACCCA AAACCGCAAA ATCACCCACC
ACCGCACCGC CCGCCGAAGT CGCCGGCGTG CGCATCTCGC ATCCCGATCG CGTCATCGAC
AAAAGCAGCG GTGCGCGCAA GATCGATCTC GTGCAGTACT ACGAGTCGGT GGCCGAATGG
ATGCTGCCAC ATCTGAAAGA CCGTCCGGTG TCGCTGGTGC GTGCGCCCGA GGACATCGGC
GGCGAGCTGT TTTTTCAGAA GCACAGCCAG AAGCTGTCGA TTCCAAATGT CACGCAGCAT
CCGGGCCTCG ATCCCGGTCA TCCGCCACTG ATCACCGTCG ATACCATCAA GGCGCTGGTC
GGCGCGGCGC AAATGGGCAC CGTCGAATTT CACACGTGGA ATGCGGTCGC ATCGAATATC
GAAAAACCGG ACCGCGCAGT CTTCGACCTA GACCCCGATG CAGCGCTAGG TTGGGAACGC
ATGATCGAAG CCGCGCAACT GACGCGTTCG CTGCTCGAGG AACTCGGCCT CACATCGTTC
TGCAAGACGA GCGGCGGCAA GGGCTTGCAT GTGGTCGTGC CGCTCGCGAA ACAGGCCGGC
TGGGACGAAG TAAAGGACTT TTCGCAAGCC GTCGCGCAGC ATATGGCTGC GACGCTGCCC
AAGTACTTCA GCGCGAAGAT GGGCGCGCAG AACCGCAAGC AGAAAATCTT CGTCGACTAT
CTGCGCAACA ACCGCGGCTC CAGCACAGTC GCCGCATTTT CGGCGCGGGC GCGTCCGGGC
CTCGGTGTAT CGGTTCCGCT TGCGTGGGAC GAAGTCGCCG GCACCACGGG CGGCGATCAA
TGGACCATCG AGAATCTGCA CGAGCGCCTC GCCGAACTCA AAAGCGACCC GTGGGCGGAC
TATGCAAAGA CGCGTCAGCG CATCACCGCG GCCATGAAAA AACGTCTGAA TGACGCGCAA
TAA
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| Protein sequence | MNDRLDLYNR KRRFDDTPEP AGTRARRKPA GRKTTRQAAG EALSYVIQEH DARRLHYDFR
LELNGTLLSW AVPKGPSLDP SVKRLAVHVE DHPVEYGSFE GEIPPGNYGA GSVIVWDRGT
WEPVGGAAEA ARSYAAGKLK FHLHGEKLHG GWTLVRSHMR GSGDKEQWLL IKERDDEARD
ESDYDILKKR PGSVLSGSAS VAKGEKTTTA ASKTARKTAA SDAKSTAKRG GKSSAKAASS
TRADPRRPDI VATRNTQSLR ELAATPSIEG AVKARLPTTF KPQLATLVDA APPGDEWSYE
IKFDGYRVLA RIDRDAKGSA VKVFTRAGND WTAKFSKQVK AFEQLGIESA WLDGEAVVLD
PNGVPNFQAL QNAFDANRPQ DIIVYLFDIP FLNGYDLRGV PLEQRRAILH ALMEDVDDSV
LRFSNNFDFS AEDLLRSACD MALEGIIGKR RDSGYLSGRS STWIKLKCRR RQEFVIGGYS
EPSGSRAAFG ALLLGVYDSK GNLNYAGRVG TGFDAALLRS VKKELDAHAT KRMPFAAVPR
ERSRTPVHWV EPVLVAECNF AEWTSDGIVR QASFVSLRND KPARQIVKET PRQGADVQQQ
TDSISDDAPK KRAARKTSGS NVAAAGKTTA AKPKTAKSPT TAPPAEVAGV RISHPDRVID
KSSGARKIDL VQYYESVAEW MLPHLKDRPV SLVRAPEDIG GELFFQKHSQ KLSIPNVTQH
PGLDPGHPPL ITVDTIKALV GAAQMGTVEF HTWNAVASNI EKPDRAVFDL DPDAALGWER
MIEAAQLTRS LLEELGLTSF CKTSGGKGLH VVVPLAKQAG WDEVKDFSQA VAQHMAATLP
KYFSAKMGAQ NRKQKIFVDY LRNNRGSSTV AAFSARARPG LGVSVPLAWD EVAGTTGGDQ
WTIENLHERL AELKSDPWAD YAKTRQRITA AMKKRLNDAQ
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