Gene Bphyt_1848 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_1848 
SymbolrimO 
ID6281781 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010681 
Strand
Start bp2075400 
End bp2076785 
Gene Length1386 bp 
Protein Length461 aa 
Translation table11 
GC content63% 
IMG OID642621411 
Productribosomal protein S12 methylthiotransferase 
Protein accessionYP_001895480 
Protein GI187923838 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0621] 2-methylthioadenine synthetase 
TIGRFAM ID[TIGR00089] RNA modification enzyme, MiaB family
[TIGR01125] MiaB-like tRNA modifying enzyme YliG, TIGR01125 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0225494 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.052969 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTGCCA CACCCCCGAT TGTCCCGACT GCCACGCCGA AGGTCGGATT CGTTAGCCTC 
GGCTGCCCGA AAGCCCTGGT CGATTCCGAG CAGATCATCA CTCAACTGCG CGCCGAAGGT
TACGAGATTT CCGGCACGTA CGACGGCGCG GACCTCGTGG TCGTCAACAC CTGCGGCTTC
ATCGACGAAG CAGTGCAGGA AAGTCTCGAC GCGATCGGCG AAGCGCTCAA CGAAAATGGC
AAGGTGATCG TGACCGGCTG TCTCGGCGCT AAGAAAAGCG CGAGCGGCTC GGGGCTGATC
GAAGAAGTGC ATCCGAAGGT GCTGGCCGTG ACCGGCCCGC ACGCGCTCGG CGAAGTGATG
CAACACGTGC ACACTCATCT GCCGAAGCCG CACGATCCGT TCGTCGACCT GGTGCCGGCC
GCCGGCGTGA AGCTCACGCC GCGCCATTAC GCGTACCTGA AAATTTCCGA AGGCTGTAAC
CACCGCTGCA CGTTCTGCAT CATCCCGTCC ATGCGCGGCG ACCTCGTGTC GCGCCCCGTT
GCCGACGTGA TGCTCGAAGC GGAAAACCTC TTCAAGTCGG GCGTAAAAGA ACTGCTGGTG
ATTTCGCAGG ACACGAGCGC CTATGGCGTC GACGTCAAAT ACCGCACGGG TTTCTGGAAC
GGCAAGCCGA TCAAGACGCG CATGACCGAT CTGGTCGGCG CGCTCGGCGA ACTCGCCGCG
CAATACGGCG CGTGGGTGCG TCTGCATTAC GTGTATCCGT ATCCGAGCGT CGACGAAGTG
ATTCCCATGA TGGCCGAAGG CCCGTACAAG GGCCACGTGC TGCCGTACCT CGACGTGCCG
TTCCAGCACG CGCATCCGGA AGTGTTGAAG CGCATGAAGC GCCCGGCCAA CGCCGAGAAG
GTGATGGAGC GCGTGAAGAA ATGGCGCGAG ATGTGCCCGG ATCTGACCAT TCGCAGCACG
TTCATCGCGG GCTTCCCGGG TGAGACTGAA GAGCAATTCC AGACGCTGCT CGATTTCATC
CGCGAGGCGG AACTGGATCG CGTGGGCTGC TTCGCCTATT CGCCGGTCGA AGGCGCGACG
GCTAACGAAC TCGACGGCGC CTTGCCCGAC GAAGTGCGCG AAGAACGCCG CGCGCGTTTC
ATGGAAGTCG CCGAAGAAGT GTCGGCCAAG CGTATCGCGA AGAAGGTCGG CAAGACGCTC
AAGGTGCTGG TCGACGAGAT CAACGCGGAC GGCGGCATCG GCCGCACCGC GGCTGACGCG
CCGGAGATCG ACGGCGTCGT GTATATCGCG CCGGCTGCGA AGGCGTCGAA GCGCTACAAG
GTCGGCGATT TCGTGTCGGT GAAGATCACC GGCGCCGACG GTCACGACCT GTGGGGCGAG
GTGTAA
 
Protein sequence
MSATPPIVPT ATPKVGFVSL GCPKALVDSE QIITQLRAEG YEISGTYDGA DLVVVNTCGF 
IDEAVQESLD AIGEALNENG KVIVTGCLGA KKSASGSGLI EEVHPKVLAV TGPHALGEVM
QHVHTHLPKP HDPFVDLVPA AGVKLTPRHY AYLKISEGCN HRCTFCIIPS MRGDLVSRPV
ADVMLEAENL FKSGVKELLV ISQDTSAYGV DVKYRTGFWN GKPIKTRMTD LVGALGELAA
QYGAWVRLHY VYPYPSVDEV IPMMAEGPYK GHVLPYLDVP FQHAHPEVLK RMKRPANAEK
VMERVKKWRE MCPDLTIRST FIAGFPGETE EQFQTLLDFI REAELDRVGC FAYSPVEGAT
ANELDGALPD EVREERRARF MEVAEEVSAK RIAKKVGKTL KVLVDEINAD GGIGRTAADA
PEIDGVVYIA PAAKASKRYK VGDFVSVKIT GADGHDLWGE V