Gene Bphyt_1642 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_1642 
Symbol 
ID6284074 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010681 
Strand
Start bp1856514 
End bp1857944 
Gene Length1431 bp 
Protein Length476 aa 
Translation table11 
GC content61% 
IMG OID642621203 
Productdihydrolipoamide dehydrogenase 
Protein accessionYP_001895276 
Protein GI187923634 
COG category[C] Energy production and conversion 
COG ID[COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes 
TIGRFAM ID[TIGR01350] dihydrolipoamide dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.370947 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.099089 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCAAAG AATTTGACGT CGTCGTGATC GGCGCAGGCC CTGGCGGTTA CATCGCCGCC 
ATCCGCGCAG CGCAGCTCGG CAAAACCGTC GCATGTATCG AAAAATGGAA GAACCCGGCC
GGCGCGCTGA AGCTCGGCGG CACCTGCCTG AACGTGGGTT GCATCCCGTC GAAGGCGCTG
CTCGCGTCGT CGGAAGAATT TGAAAACGCG TCGCATCACC TCGCCGACCA CGGCATTTCC
GTGGAAAACG TGTCGGTCGA TATCGCGAAG ATGATGGCCC GTAAAGAAGG CATCGTCGAA
AAGATGACCA AGGGCATCGA ATTCCTGTTC CGCAAGAACA AGATCACGTG GCTCAAGGGT
CACGGCAAGT TCACCGGCAA GACGGACGCC GGCGTGCAGA TCGAAGTGAG CGGCGAAGGC
GAAACGGAAA CGGTCACGGC GAAGAACGTG ATCATCGCCA CGGGTTCGAA GGCACGCCAT
CTGCCGAATG TTCCGGTCGA CAACAAGATC GTCGCCGACA ACGAAGGCGC GCTGAGCTTC
GAATCCACGC CGAAGAAACT CGCCGTGATT GGCGCAGGCG TGATCGGCCT GGAACTGGGT
TCGGTGTGGC GCCGTCTGGG CGCGGACGTG ACTGTGCTCG AAGCGCTGCC GGAATTCCTC
GGCGCGGCTG ACCAGGCGCT CGCGAAAGAA GCGGCTAAGC AGTTCAAGAA GCAAGGTCTG
GATATCCACG TCGGCGTGAA GGTCGGCGAA GTAACCACGA CCGATAACAG CGTGACGGTC
AACTACACGG ACAAGGACGG CAACGCGCAG AAGCTCGAAG CCGACCGTCT GATCGTGTCG
ATCGGCCGCG TGCCGAACAC CGACAACCTC GGTCTCGAAG CGATCGGCCT GAAGGCCAAC
GAGCGCGGCT TCATCGACGT CGACGATCAT TGCGCGACGG CGGTGCCGAA CGTGTACGCG
ATAGGCGACG TGGTGCGCGG CCCGATGCTC GCGCACAAGG CCGAAGACGA AGGCGTGCTG
GTTGCCGAAA TCATCGACGG TCAGAAGCCG CATATCGACT ACAACTGCGT GCCGTGGGTG
ATCTACACCG AACCGGAAAT CGCGTGGGTC GGCAAGACGG AACAGCAACT GAAAGCAGAA
GGCCGCGAGA TCAAGACAGG CCAGTTCCCG ATGATGGCAA ACGGCCGCGC GCTCGGCATC
AACAAGGCGG AAGGCTTCGT CAAGATGATC GCCGATGCGA AGACGGACGA AATCCTCGGG
GTGCACATCA TCGCCGCGGA CGCATCGGAC CTGATCGCTG AAGCCGTGGT GGCGATGGAA
TTCAAGGCGG CGTCGGAAGA CATCGGCCGC ATTTGCCATC CGCACCCGTC GCTGTCGGAA
GTCATGCGCG AAGCGGCTCT CGCCGTCGAC AAGCGCGCGC TGAACATGTA A
 
Protein sequence
MSKEFDVVVI GAGPGGYIAA IRAAQLGKTV ACIEKWKNPA GALKLGGTCL NVGCIPSKAL 
LASSEEFENA SHHLADHGIS VENVSVDIAK MMARKEGIVE KMTKGIEFLF RKNKITWLKG
HGKFTGKTDA GVQIEVSGEG ETETVTAKNV IIATGSKARH LPNVPVDNKI VADNEGALSF
ESTPKKLAVI GAGVIGLELG SVWRRLGADV TVLEALPEFL GAADQALAKE AAKQFKKQGL
DIHVGVKVGE VTTTDNSVTV NYTDKDGNAQ KLEADRLIVS IGRVPNTDNL GLEAIGLKAN
ERGFIDVDDH CATAVPNVYA IGDVVRGPML AHKAEDEGVL VAEIIDGQKP HIDYNCVPWV
IYTEPEIAWV GKTEQQLKAE GREIKTGQFP MMANGRALGI NKAEGFVKMI ADAKTDEILG
VHIIAADASD LIAEAVVAME FKAASEDIGR ICHPHPSLSE VMREAALAVD KRALNM