| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_1636 |
|---|
| Symbol | |
|---|
| ID | 6284570 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | - |
|---|
| Start bp | 1846099 |
|---|
| End bp | 1847373 |
|---|
| Gene Length | 1275 bp |
|---|
| Protein Length | 424 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642621197 |
|---|
| Product | efflux pump membrane protein |
|---|
| Protein accession | YP_001895270 |
|---|
| Protein GI | 187923628 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR00998] efflux pump membrane protein (multidrug resistance protein A) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.00067211 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACCA CCCAACAGCC CGCGGCAACT ACACAGCCGA CTCAATCGGC CCCGCAGCCG
ACGCAACCGC CGGCGCAGCC ACCGGCGAAC AACGGCAAAC GCAAGCGCAT GATGACGCTG
CTCGTCATCG TGATCCTGAT CGCCGCGATC GCTTATGGCC TGTACTACTT CCTCGTCGCG
CGCTTCCATG AAGACACCGA CGACGCGTAC GTGAACGGCA ATGTCGTGCA GATCACGCCG
CAGGTTACCG GCACGGTCGT CGCCGTGAAC GCGGACGACA CGCAAACGGT GAAGGTGGGC
GACCCGCTCG TCGTGCTCGA TCCTGCCGAC GCCCGCGTCG CGCTGGAACA GGCCGAAGCG
AACCTCGCGC AGACGGTGCG TCAGGTGCGC GGCCTGTTCG CCGACGACAA TCAATATCAG
GCGCAAGTGG CCCAGCGCCA AGCCGATCTA TCGCGCGCCC AGGACGACCT GAAGCGCCGC
CTGACGGTCG CGCAAACCGG CGCGGTGTCG CAAGAAGAAA TCTCGCACGC CCGCGACGCC
GTGAAGAGCG CGCAAGCCGC CGTCGACGCC GCCCAGCAGC AATTGAACTC GAACCGCGCG
CTGACCGCCA ACACCACGAT CGCGAATCAC CCGAACGTGC AGGCCGCCGC CGCGAAGGTC
CGCGACGCGT ACCTGAACAA CGCGCGTAAC AACCTGCCGG CGCCGGTCAC CGGCTACGTG
GCGAAGCGCT CGGTGCAGGT CGGCCAGCGC GTCTCGCCGG GCACCCCGCT GATGGCGATC
GTGCCGCTCG GCGGCGTGTG GGTCGACGCG AACTTCAAGG AAGTACAACT CAAGCACATG
CGCATCGGCC AGCCGGTCGA ACTGACGGCC GACGTGTACG GTTCGTCGGT CGTGTACCAC
GGCAAGGTGG TCGGCTTCTC GGCGGGCACG GGTTCGGCGT TCTCGCTGCT GCCCGCGCAG
AACGCGACCG GCAACTGGAT CAAGGTGGTG CAGCGTCTGC CGGTGCGGAT CGCGCTCGAT
CCGAAGGAAC TGGAACAGCA TCCGCTGCGT ATCGGCCTGT CCATGCAAGC CGACGTCAGC
ATCAAGGACG ACAACGGCGG CCAGCTCGGC CAGGCGCCGA ATACGGTCTA CCAGACCGCC
GTGTTCGAGA AGTACGGTGA CGAAGCCGAC GCGGAAATCG CCCGCATCAT TTCGCAAAAC
GCCGGTCCGA ACGGCGGCTC GCAAAAGTCG TCTCAGGCGG ACGGCGCGAA GCCTGTCGCA
GCGAAGGTGA TGTAA
|
|---|
| Protein sequence | MSTTQQPAAT TQPTQSAPQP TQPPAQPPAN NGKRKRMMTL LVIVILIAAI AYGLYYFLVA
RFHEDTDDAY VNGNVVQITP QVTGTVVAVN ADDTQTVKVG DPLVVLDPAD ARVALEQAEA
NLAQTVRQVR GLFADDNQYQ AQVAQRQADL SRAQDDLKRR LTVAQTGAVS QEEISHARDA
VKSAQAAVDA AQQQLNSNRA LTANTTIANH PNVQAAAAKV RDAYLNNARN NLPAPVTGYV
AKRSVQVGQR VSPGTPLMAI VPLGGVWVDA NFKEVQLKHM RIGQPVELTA DVYGSSVVYH
GKVVGFSAGT GSAFSLLPAQ NATGNWIKVV QRLPVRIALD PKELEQHPLR IGLSMQADVS
IKDDNGGQLG QAPNTVYQTA VFEKYGDEAD AEIARIISQN AGPNGGSQKS SQADGAKPVA
AKVM
|
|---|
| |