Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_1629 |
Symbol | |
ID | 6283216 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010681 |
Strand | + |
Start bp | 1835368 |
End bp | 1837248 |
Gene Length | 1881 bp |
Protein Length | 626 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 642621190 |
Product | pseudouridine synthase |
Protein accession | YP_001895263 |
Protein GI | 187923621 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.00621954 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | TTGACACATA CCCACGACAC CGATTCGTCC GAATCCGAGC GCGCCGTGCC GTCGGCGCGC GCTGATGAAA CGCGCACCAC GCAAGCGTCG GCAGGCGAGG GCGAGCGCCC GGCGCAGACC ACGGAAGCAG ACGGCGAAGA CCGTCCGCGC CGCGGCCTGC GTCGCGGCCC GCGCAGCCTG ATCGCGCGGC GCCGCGCCGG CGCGAAGACG AAGGGCGCCG AAGGCGCGCC CGCGCAAGGG GCGCCGGTCG TCACCGAGGC GCCGCCGGAC GGCGAAGTCG TCGCGCAAGT GCGTATGCCG CGCAAGGATG CGGGCGCCAA GGGTCAGGGG CCGCGCCGCA ATGCAGCCGG CGCGAAGCGC GAGGGCGCAC CGCGTGACGG CGCGCCGCGC GAAGGTCAGC GAGAAGGTCA ACGCGAGCGT CAGCCGCGCG AAGGTGGTCA GCGTCAAAAC AACCGCCGCG GCGGTGAAGC GCCGGCAGCC GCGGCAGTCG CGGGCCAAGA CGATCTGTTC TCGTACGTCA CATCCCCCGC GTTCGACGCG GACAACAGCG CCACCGGCGG CGTGCGCGCG CCGATGCTGC GCCGTGGCAA GCCGGCCGCG CCCAAGCGCG TGCTCGCAGC CGACGACGAC GCGCCGAAGC TGCACAAGGT GCTGGCCGAA GCCGGCATGG GTTCGCGCCG CGACATGGAA GAACTGATTG TCGCCGGCCG CGTGTCGGTG AACGGCGAGC CGGCTCACAT CGGCCAGCGC ATCATGCCGA CCGACCAGGT CCGCATCAAC GGCAAGCCGG TCAAGCGCAA GTTGGCCAAT AAGCCGCCGC GCGTGCTGCT GTACCACAAG CCGACCGGCG AGATCGTCAG CCACGCGGAT CCGGAAGGCC GTGCGTCGGT GTTCGACAAT CTGCCGCCGA TGAAAACCGC CAAGTGGCTC GCGGTCGGCC GTCTCGACTT CAACACAGAA GGTCTGCTGA TGCTGACCAC GTCGGGCGAT CTGGCGAACC GTTTCATGCA CCCGCGTTAT AGCGTCGAGC GTGAATATGC GGTGCGCGTG GTCGGCGAAC TGGCTGAAGG GATGCGTCAG AAGCTGCTGA ACGGCGTCGA GCTGGAAGAC GGCCCGGCGA ACTTCCTGCG TATCCGCGAT GGCGGCGGCG AAGGCACGAA TCACTGGTAT CACGTCGCGC TCGCCGAAGG GCGTAACCGC GAAGTGCGTC GTATGTTCGA AGCAGCCGGC CTGATGGTCA GCCGCCTGAT CCGCACCCGT CACGGCCCGA TCTCGCTGCC GAAGGGTCTC AAGCGCGGCC GCTGGGAAGA ACTCGAAGAC AATCAGGTGC GCGCGCTGAT GGCGTCGGTC GGCCTGAAGG CGCCGACTGA AGAAAAAGGT GGTCGCCGGG AAGCGCCGGA GCGCAAGCAG CCGGACCCGA TGCAGACGTC GATGGGTTTC ATTGGCCGCG AACCTGTGCT GATGTCGCAC AGCCGCTTCG ATCAGCAGCA ACCGCGTGGT CAGGGCCAAG GTCGGCGGGG TGCGGCGGGC GGTGGCTTCG GTGGCGGCGC GGGCGCCGGT TTCGGTGGCG GTTACGGCAA TCGCGGCGCC GGGCGCGGCG CCGGCGGTTT CAGCGGCCCG ATGGGCGGCG GCGCGGGCGG CCCGCGTGGC GGCCGTGAAG TCGATGGCAA TCGCGCACCG TCGGGCAATG GCAACCGTGC GGCTGGCGGC GGCAAGCGCG CCGGCGGCAG CGGCGGCCCC AATCCGGGTA GCGGCGGTGG CAACCGCGGG CCTGGTGGCA ATCGCGGCGG CGCCGGCAAC CGTGCGGGCG GCGGCAATGC CAACGCCGGC GGCGCCAATC GTGGCGGCGG CGCACCTCGC GGCCGTTCGC GCGGCCGCTG A
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Protein sequence | MTHTHDTDSS ESERAVPSAR ADETRTTQAS AGEGERPAQT TEADGEDRPR RGLRRGPRSL IARRRAGAKT KGAEGAPAQG APVVTEAPPD GEVVAQVRMP RKDAGAKGQG PRRNAAGAKR EGAPRDGAPR EGQREGQRER QPREGGQRQN NRRGGEAPAA AAVAGQDDLF SYVTSPAFDA DNSATGGVRA PMLRRGKPAA PKRVLAADDD APKLHKVLAE AGMGSRRDME ELIVAGRVSV NGEPAHIGQR IMPTDQVRIN GKPVKRKLAN KPPRVLLYHK PTGEIVSHAD PEGRASVFDN LPPMKTAKWL AVGRLDFNTE GLLMLTTSGD LANRFMHPRY SVEREYAVRV VGELAEGMRQ KLLNGVELED GPANFLRIRD GGGEGTNHWY HVALAEGRNR EVRRMFEAAG LMVSRLIRTR HGPISLPKGL KRGRWEELED NQVRALMASV GLKAPTEEKG GRREAPERKQ PDPMQTSMGF IGREPVLMSH SRFDQQQPRG QGQGRRGAAG GGFGGGAGAG FGGGYGNRGA GRGAGGFSGP MGGGAGGPRG GREVDGNRAP SGNGNRAAGG GKRAGGSGGP NPGSGGGNRG PGGNRGGAGN RAGGGNANAG GANRGGGAPR GRSRGR
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