Gene Bphyt_1479 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_1479 
Symbol 
ID6284109 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010681 
Strand
Start bp1656911 
End bp1657936 
Gene Length1026 bp 
Protein Length341 aa 
Translation table11 
GC content64% 
IMG OID642621044 
Productporin Gram-negative type 
Protein accessionYP_001895117 
Protein GI187923475 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3203] Outer membrane protein (porin) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones56 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACGTTC GATCGTTAAG CGCGCTCGCG CTCGTTTGCG CCTCCGCATG GTGTATCGCT 
TCACAAGCCG TGCAGGCGCA GACGTCCGTC ACGCTGTATG GGCTCGTCGG GCTGGATATC
GCCAGCAGCA AACGCAGCAA CGGACCACCC GCCGCACTCG CCGAACAGAG CCCCGGGCTA
ACGGCGCCGT ACTGGGGCAT CCGCATCAAC GAAGAACTGG GTGCCGGTTA TCACGCGATC
GCCGTGCTCG AGAGCTTCTT TCAGCCGACC AACGGCGGCC TTGGCCGCAC CGCCGCCGAC
CCCTTCTGGG GACGCAACTC GTATGTCGGC ATCGCCGGGC CATTTGGACG CGTGACGTTC
GGCCGGCACA CCAATCTGCT CTACCTTGCC GAGCAGGTCG CCAATCCGTT TCAGGCGTCG
ATCCTGTTTT CGCCGCTCGT CATGCAGACT TTCACCGCGC CCTACGGCGG CGCGATTGCG
GGCGACACCG TCTGGAATAA CGGCATTCAG TACACCAGCC CGAATCTGAA CGGCCTGACC
GCCACGGCCG TGTATGCGCC CGGCGGCGTC GCGGGCGCGA ACGGGATCTA CAACGCCGCG
TTCTCCGCGC TCTACGCCGG CGGTTCGCTC ACCGCTGTCG CGACGGTACA ACGCACGCGC
GTGGTTGCGG GTGTCGCGGC GCCGACACAG AACGCGTACA TCGTCGGCGC CGCGTACGAC
TTTTCGCTTT TCAAGCTGTA TGGCGCATTG CAAGGACTGC GCACCGACTC GACCGACGTC
GGCGCGCACA CCTTCGAAAC CGGCCTGTCC GTGCCGCTGA CCTCACAGCT CACCGCCCTC
GCCGAATGGG CGTACACGCG ACGCAGCGCG CCGAAAAACA TCGTCACAGG CCGCAATACG
GGCTCCGCGG GTCTCGACTA TTTCTTGTCC AAACGCACCG ACCTCTACCT GCTCACCGTC
TACGACCGGC TTTCCGGCTA TGGCACCGCG ATGACTTATG CAGCAGGAAT CCGGCATCGG
TTTTGA
 
Protein sequence
MNVRSLSALA LVCASAWCIA SQAVQAQTSV TLYGLVGLDI ASSKRSNGPP AALAEQSPGL 
TAPYWGIRIN EELGAGYHAI AVLESFFQPT NGGLGRTAAD PFWGRNSYVG IAGPFGRVTF
GRHTNLLYLA EQVANPFQAS ILFSPLVMQT FTAPYGGAIA GDTVWNNGIQ YTSPNLNGLT
ATAVYAPGGV AGANGIYNAA FSALYAGGSL TAVATVQRTR VVAGVAAPTQ NAYIVGAAYD
FSLFKLYGAL QGLRTDSTDV GAHTFETGLS VPLTSQLTAL AEWAYTRRSA PKNIVTGRNT
GSAGLDYFLS KRTDLYLLTV YDRLSGYGTA MTYAAGIRHR F