| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_1282 |
|---|
| Symbol | |
|---|
| ID | 6283483 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | + |
|---|
| Start bp | 1438463 |
|---|
| End bp | 1440109 |
|---|
| Gene Length | 1647 bp |
|---|
| Protein Length | 548 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642620841 |
|---|
| Product | PAS/PAC sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_001894921 |
|---|
| Protein GI | 187923279 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.153514 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.0403413 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACAGCC GCCACCAGGA ACCTTCCTCG CCGACTCGCC AGTTCGACGC AGCCGCCGCA
TTCGAGGCGT TGCCCGAGGC CTACCTGATC CTCAACCACC GCTACGAGAT CCTGCTCGCC
AACGCACGTT ATCTGCACTT GACGGGGCAG TCGGCGGTCG ATCTGCTCGG CAAATCGATT
CTCGACGTTA ATCAGTTCGG CTCGTCCGAG CAACGGGAAG CGCGGCGTGC GTGGCTGACC
ACTGCCTTGC GCGAGCTGTC CACTGGCGAG TCGAAATGGT CGCCGCTGTT TCGCTACGAA
ATGCCCGGTC ACGCGGGGGC AGGCGGCGAG AGCGAAACCC GGCTGCCGCG CTACTGGACG
ATCAAGGCGA GCCTGTTGCC CGCGCGTGAC GGACAAGCCA GCGCGATCGC GCTGCGTGTG
AGCGAAGTCA CCGAGCGCGT TTCCGACTAC GAACGCGACC AGCGTGAGCG CGCGAAGCTG
CGCTCGCAGG CCCAACTGCG CCGGCTCCTC GCCGATGAAG CCAGGGCGCA ATTGCGCGAG
CAGCAGGAGC GCTTCCAGAT TGCCATGACG TTTTCGCAAC TGGGCGCGTG GGAACTGGAT
CCGGTGACCG GTGCGATTGA TTGCACCGAT CAATGCAAGT TGAACCTCGG TCTGGGGTTG
AACGCGGAGT TGACCGCAGC GCGCCTGTTC GACGAAATCG TGCATCCCGA AGACCGCGCC
CGTTTGCGTG ATGCGATGAA TCAGGCGCTG GCGGCCCACG ACCATTTCGA AGTCGATTAC
CGGGTCGGCT GGGCAAACGG CAGTGTGCGC TGGATCCTCG TGCGCGGCGT CGGCCGTTTC
CTGCCGGACG GCACCTTGAG TTCCATCATC GGCTTCACGC TCGACATCAC GTCGCGGAAA
GAAGCCGAAC TAGAGCAGCG GGAGATCGCG GCTTCCGAGA AACGCATGCG CGAGCATAGC
GAACGTCTCG CCATGGCAAT GGATCATTTC GTCACCACCG TCAGCCACGA ACTGCGCTCG
CCGCTTTCGG CCATCATGTC GTGGACCGAT CTGTTGCAGC GCGCAGCCGA TCCTTCGCAT
CTGGCGCGCG CCACCAGCGT GATCAGCCGC AACGCGCGGC AACTGTCGCA TATGGTGGAC
GATCTGCTCG ACAGCGGCGC GATCGTGACC GGCAAATTGT CGGTCAATTT GCAGCCCGTC
GATCTTGGCG CGCTGGCCGG GATCATCGCT GAAGATATGC GCATGCATGC CGAAGCCAAA
GGCTTGCGGC TGATTGCGGA CGATCTGGCG TCCGCTACGG TGCTCGCCGA CGAAGGCCGC
ATGAAGCAGG TGGTCTGGAA TCTCGTGTCG AACGCGGTGA AATTCAGCCC GCAAGGCACC
GTCGAACTGT CGGTGCGGGC CGACGCCGAG TGTGTCGAAG TCGCGGTGCG CGATACCGGG
CTCGGTCTGG ATCGGGAATC GATGGAGCGG ATTTTCGAAC GCTTCCAGCA GTTCGGTGCC
GATGGTTCTG GCCGCGTGGC CGGTCTCGGT TTGGGATTGT GGCTCGTGAA GAACCTGGTG
GATCTGCACG GCGGCACGGT CACCGCGGAA AGCCCCGGCC CGGGACAGGG CGCGACGTTT
CGGGTGAGGC TGCCGGCGTA CCGCTAG
|
|---|
| Protein sequence | MDSRHQEPSS PTRQFDAAAA FEALPEAYLI LNHRYEILLA NARYLHLTGQ SAVDLLGKSI
LDVNQFGSSE QREARRAWLT TALRELSTGE SKWSPLFRYE MPGHAGAGGE SETRLPRYWT
IKASLLPARD GQASAIALRV SEVTERVSDY ERDQRERAKL RSQAQLRRLL ADEARAQLRE
QQERFQIAMT FSQLGAWELD PVTGAIDCTD QCKLNLGLGL NAELTAARLF DEIVHPEDRA
RLRDAMNQAL AAHDHFEVDY RVGWANGSVR WILVRGVGRF LPDGTLSSII GFTLDITSRK
EAELEQREIA ASEKRMREHS ERLAMAMDHF VTTVSHELRS PLSAIMSWTD LLQRAADPSH
LARATSVISR NARQLSHMVD DLLDSGAIVT GKLSVNLQPV DLGALAGIIA EDMRMHAEAK
GLRLIADDLA SATVLADEGR MKQVVWNLVS NAVKFSPQGT VELSVRADAE CVEVAVRDTG
LGLDRESMER IFERFQQFGA DGSGRVAGLG LGLWLVKNLV DLHGGTVTAE SPGPGQGATF
RVRLPAYR
|
|---|
| |