| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_1268 |
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| Symbol | |
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| ID | 6281838 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | - |
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| Start bp | 1424141 |
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| End bp | 1426690 |
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| Gene Length | 2550 bp |
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| Protein Length | 849 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642620827 |
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| Product | fimbrial biogenesis outer membrane usher protein |
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| Protein accession | YP_001894907 |
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| Protein GI | 187923265 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3188] P pilus assembly protein, porin PapC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0271633 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.105864 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGGGCA TGGACCGGGC CGAAGCGCAG CCTTCACTGC AGTTCGCGGA TACGGGCGTC
GATGCGCGCA CCGACTCGGA CGTGGACATG GGCGGCCGTC ACGCCGATGC CCGCGCGCCC
ACGCCAGCCG CCAACGTGGA CAGCGCAAGG TCTGTCACAG CGAAGCCCGC GCAAGCTTCC
GCTGCGGGCC GTGATCTGTA TCTGGAAGTC ATGCTGAACG GCCAACGCAC TTCTTTGATC
GCCCACTTTC GCGAAAGCGA CGGCCGGCTC AGCGCGACGG CCAGGGATTT GAGCGACATC
GGCGTCGCCA CGGAGAAGCT CGGCGCCGCC GACACCGCCA CGCTCGAACT CGACCAGATC
CCTGGCCTGC GCTATCACTA CGACGCCGGG CGTCAGAGCA TCGACCTGCA GGTGCCCGAC
GCCATCCGCA AGCCATACAC GTTCGACACG CGCGAGCTGG CGCAGACGCC GAACGCCACT
GCGTCGCGCG GCTTTCTGAT CAACTACGAT GCGTTCGCGC AAACCGACAC CAACGCGCAG
TTCGCACTAT GGAGCGAGCA ACGCTACTTC GACCCGGCCG GTGTGTTGAG CAACACCGGC
ATTGCGTATC TATATCGCGA TCTGCATCGC TACGTGCGAT ACGACACTTC GTGGAGCAGG
TCGAATCCCG CGGCGCTCAG CACTACCCAG TTCGGCGACA CCATTTCGTC ATCGCTCGAC
TGGAGCCGCT CGATTCGCAT CGGCGGGTTT CAGTGGCGCA GCAACTTCGC GCTGCGCCCC
GACCTCGTGA CCTTTCCCGT GCAGGCGCTG TCGGGCACGG CCGTGGTCCC GTCGGCGGTG
GACCTGTATA TCAACAACGT GCGCCAGTTC AGCGGCAACG TGCCGAGCGG ACCGTTTATC
GTCAACAACG TGCCGGGCAT CACCGGCGCG GGCGAAGCCA CCGTGATTAC GCACGACGCG
CTCGGCCGCA CCATTTCGAC TTCGCTGCCG CTCTACGTCG ATACGCGCAT GCTGGCCGCG
GGCCTGTCGA GCTATTCGTT CGAAGCCGGC TTCCTGCGCC GCGCATACGG CATCGATTCG
TTTTCCTACG ATCCGCGTCC CGCCGTCAGC GCCACCGCGC GCCGCGGCAT GAGCGACACG
CTGACGCTGG AAGGCCACGC GGAAGCGACC GGCGGACTCG CCAATGCGGG CGCCGGCGCG
CTGGTGCGCA TAGGCATGGC GGGTGTGATC AATGGCTCGG TGTCGGGGAG CGCGGGTAAG
CTGAACGGCA TCCAACTCGG TCTCGGCTAT CAACTGATCG AGCCACACTT CTCGATCGAC
GCACAAACCT TGCGCGTGTA CGGCAACTAC GGCGACCTCG CCGCGCGCGA CGGCACACCC
GTGCCCACCG CCACCGACCG CGTCACGCTG GCGTTGCCCT TCTTCAGCCG CCAGACGCTG
TCGCTTAGCT ACGTCGGCTA CCGTTATCCC GGCGTGCCGG CGTCGCGCAT CGGCTCGCTG
TCGTACACGC TCAACTTCGG CAATCTCGCG TCGCTCACGC TCAGCACCTA CAAAGACTTT
CTGCAGCACA ACGCGCAAGG CGTGTTTCTG ACCGCGAGTT TCGGGCTCGG CAATAACACC
GCGATCAACG CGAGCGTGGG CCGCCAGAAC GGCCAGTCCA CCTACAACGT CAACGCGCAG
CGTCCACCCG ATTACGCCGG CGGCTGGGGT TGGGGCGTGC AGGCGGGCGG CTCCGGCGCG
GTGCCGTACC GTCAGGCGCA GGCGCGATAT CTCGGCAGAT ATGGCCAGGT GACGGCACTT
GCGCAGGACA TCGACCGGCA TGCGGGCGCC TCGCTCGACG TCACCGGCGC GATCGTGCTG
ATGGACCGCA CCGTGCAACC GGCGCGCCGG ATCGACGACG GCTTCGCGCT GGTTTCCACC
GACGGCGCGG CGAGCGTGCC GGTGCTGCAC GAGAACCGCG TGATCGGTAC GACCGACCGC
GGTGGGCATC TGCTGATTCC CGATCTGAAC GCGTACCAGC ACAACCAGGT CGGGATCGAC
AGCATGAATC TGCCTGCCGA CGCGCGTATC GCCACGACCG CGATGGACCT CGTGCCGAAG
TCGCGTGCCG GCGTGCTGGC GAGCTTCCGC GTGTCGCGCT ATAGCGCGGC CTCGGTGATT
CTGCGCAGCG CCGACGGCCA CCTGATGCCG CCGGGCACGC GCGTGCACCA CGTGGAAAGC
GGGGTGGACA CGATCGTCGG CTACGACGGC CTGACTTTCA TCGAAAACCT GCAGCACGAC
AATCATCTGG AAGTCGAGAA CGGCTCCGCG ACGTGTAGCG TCGAATTCAT CTACGAGCGC
CCTGCTAACG GCTCGTTGCC GACCATCGGA CCGCTGACCT GCGGCGCGCG TGGTTCCAAC
GCGGCAGCGG ATGCAATGTC GGCCGCTGCG ACGAATGCAG CGATGAATGC AGCAGCTAAT
GCAGCGGCAA CCGCAGCAAT GAACGCTACA GCGAATGCCG CGGCGAATGC AGTCACGGAT
GCCGCGACAA ACGTGAAGGC AGCGCAATGA
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| Protein sequence | MLGMDRAEAQ PSLQFADTGV DARTDSDVDM GGRHADARAP TPAANVDSAR SVTAKPAQAS
AAGRDLYLEV MLNGQRTSLI AHFRESDGRL SATARDLSDI GVATEKLGAA DTATLELDQI
PGLRYHYDAG RQSIDLQVPD AIRKPYTFDT RELAQTPNAT ASRGFLINYD AFAQTDTNAQ
FALWSEQRYF DPAGVLSNTG IAYLYRDLHR YVRYDTSWSR SNPAALSTTQ FGDTISSSLD
WSRSIRIGGF QWRSNFALRP DLVTFPVQAL SGTAVVPSAV DLYINNVRQF SGNVPSGPFI
VNNVPGITGA GEATVITHDA LGRTISTSLP LYVDTRMLAA GLSSYSFEAG FLRRAYGIDS
FSYDPRPAVS ATARRGMSDT LTLEGHAEAT GGLANAGAGA LVRIGMAGVI NGSVSGSAGK
LNGIQLGLGY QLIEPHFSID AQTLRVYGNY GDLAARDGTP VPTATDRVTL ALPFFSRQTL
SLSYVGYRYP GVPASRIGSL SYTLNFGNLA SLTLSTYKDF LQHNAQGVFL TASFGLGNNT
AINASVGRQN GQSTYNVNAQ RPPDYAGGWG WGVQAGGSGA VPYRQAQARY LGRYGQVTAL
AQDIDRHAGA SLDVTGAIVL MDRTVQPARR IDDGFALVST DGAASVPVLH ENRVIGTTDR
GGHLLIPDLN AYQHNQVGID SMNLPADARI ATTAMDLVPK SRAGVLASFR VSRYSAASVI
LRSADGHLMP PGTRVHHVES GVDTIVGYDG LTFIENLQHD NHLEVENGSA TCSVEFIYER
PANGSLPTIG PLTCGARGSN AAADAMSAAA TNAAMNAAAN AAATAAMNAT ANAAANAVTD
AATNVKAAQ
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