| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_1139 |
|---|
| Symbol | |
|---|
| ID | 6282948 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | + |
|---|
| Start bp | 1281762 |
|---|
| End bp | 1283198 |
|---|
| Gene Length | 1437 bp |
|---|
| Protein Length | 478 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642620698 |
|---|
| Product | alpha,alpha-trehalose-phosphate synthase (UDP-forming) |
|---|
| Protein accession | YP_001894779 |
|---|
| Protein GI | 187923137 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0380] Trehalose-6-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR02400] alpha,alpha-trehalose-phosphate synthase [UDP-forming] |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.83034 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAGAC TGATCGTGGT ATCGAATCGT GTCGCGCCGA CGCAGGAAGG CCGTCCCGCA
GCGGGCGGCC TCGCCATCGG CGTGCTGGAC GCGCTGAAGG AAAGCGGCGG GGTGTGGTTC
GGCTGGAGCG GCGAGACGGT GAGCGAGCCG AGCGCTCCGG TGATAGAAAA ACAAGGCAAC
GTGACGTACG CGACGGTGGG CCTCACCAAG CGCGATTACG ACCAGTACTA CCGCGGATTT
TCCAATGCGA CGCTGTGGCC GACGTTCCAC TATCGCAACG ACCTGTCGCG CTACGACCGG
CAGGAATACG CGGGCTATCA GCGCGTCAAC GCAACGCTGG CGAAGCAGCT CAAGGCGCTG
CTCAAGCCCG ACGACATCAT CTGGGTTCAC GATTATCACC TGCTGCCGTT CGCACGCTGC
CTGCGCGAAC TGGGCGTGAA AAATCCGATC GGTTTCTTCC TGCACATTCC GTTTCCGGTG
CCGGAAGTGC TGCGCACGAT TCCGCCGCAC GAAGAACTGG TCAAGGCCAT GTGCAGCTAT
GACGTGATCG GCTTCCAGAC TGATGCGGAT CGCCAGTCGT TCGTCGACTT TATCGAGCGC
GGCCAGCACG GCACCTCGAG CGAAGACGGC ATGGTGCACG CGTATAACCG CTTCCTGAAA
GTGGGCGCGT ATCCGATCGG GATCTATCCG GACGCGATCG CCAAAGCCGC CGAGCAGTTC
ACCGACCGCA AGCCAGTGCG TAGCCTGCGC GACGGCATGC GCGGACGCAA GCTGATCATG
AGCGTGGACC GCCTCGACTA TTCGAAGGGT CTGGTGGAGC GCTTCCAGGC GTTCGAGCGG
CTGCTGCTGA ACGCGCCGGG TTGGCACGGG CGCGTGTCGC TGGTGCAGAT CGCGCCGCCG
ACGCGCGCGG ACGTGTCGAC CTACCAGAGG ATTCGTCAGA CGCTCGAGGG CGAAGCGGGC
CGCATCAACG GCCGGTTCGC GCAACTCGAC TGGACGCCGA TCCAGTACCT GAACCGCAAA
TACGAGCGCA ATCTGCTGAT GGCGCTGTTC CGTCAATCGC AGGTCGGCTA TGTGACGCCG
CTGCGCGACG GCATGAATCT CGTCGCGAAG GAATATGTCG CTTCGCAGGA TCCGGCTGAT
CCGGGCGTGC TGGTGCTGTC GCAATTCGCC GGCGCCGCCG AGCAACTGCC CGGCGCGCTG
GTCGTCAATC CGTTCGATCT GTCGCAGATG GCTGAGGCGC TGGAACGCGC ACTGTCGATG
CCGCTAGCCG AGCGTCAGGC GCGCCATGCC GACATGATGG CGCCGATGCG CGAGAACAAT
CTGTCCGTCT GGCGCGATAC CTTCCTCGCG GATCTGCGCA ACGTCGCGAC GGCATCTTCG
GTGACGGCCA AAGCGGTAAA GCTCGCTGAC GTGACCGCGT CGTCGTTGCG GGATTGA
|
|---|
| Protein sequence | MSRLIVVSNR VAPTQEGRPA AGGLAIGVLD ALKESGGVWF GWSGETVSEP SAPVIEKQGN
VTYATVGLTK RDYDQYYRGF SNATLWPTFH YRNDLSRYDR QEYAGYQRVN ATLAKQLKAL
LKPDDIIWVH DYHLLPFARC LRELGVKNPI GFFLHIPFPV PEVLRTIPPH EELVKAMCSY
DVIGFQTDAD RQSFVDFIER GQHGTSSEDG MVHAYNRFLK VGAYPIGIYP DAIAKAAEQF
TDRKPVRSLR DGMRGRKLIM SVDRLDYSKG LVERFQAFER LLLNAPGWHG RVSLVQIAPP
TRADVSTYQR IRQTLEGEAG RINGRFAQLD WTPIQYLNRK YERNLLMALF RQSQVGYVTP
LRDGMNLVAK EYVASQDPAD PGVLVLSQFA GAAEQLPGAL VVNPFDLSQM AEALERALSM
PLAERQARHA DMMAPMRENN LSVWRDTFLA DLRNVATASS VTAKAVKLAD VTASSLRD
|
|---|
| |