Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_1020 |
Symbol | |
ID | 6284584 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010681 |
Strand | + |
Start bp | 1145961 |
End bp | 1148246 |
Gene Length | 2286 bp |
Protein Length | 761 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 642620581 |
Product | Lysine decarboxylase |
Protein accession | YP_001894663 |
Protein GI | 187923021 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1982] Arginine/lysine/ornithine decarboxylases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGTTTC GTTTTCCCGT CGTCATCATC GACGAAGATT TCCGCTCCGA GAACATCTCG GGTTCCGGCA TTCGCGCTCT GGCCGAAGCC ATCGAGAAAG AAGGCGCGGA AGTGCTCGGG TTGACGAGCT ACGGCGATCT GACCTCGTTC GCGCAACAGT CGAGCCGTGC CTCGTGCTTC ATCCTCTCGA TCGACGACGA CGAGTTGCTG CCCTACGTCG ATAACGTGGT GGTGGAAGGC GAAACGCCGG AACTCGCGGC CGCGATCGTC GCGCTGCGCG CGTTCGTGAC GGAAGTGCGC CGCCGCAATG CCGACATTCC GATCTTCCTG TACGGCGAAA CGCGTACGTC GCGCCACTTG CCGAACGACA TCCTGCGTGA ACTGCACGGC TTCATCCACA TGTTCGAGGA TACGCCGGAG TTCGTGGCGC GCCATATCAT CCGCGAGACC AAGGTGTATC TGGATTCGCT CGCGCCGCCG TTCTTCAAGG AACTGGTGCA GTACGCGGAT GAAGGCTCGT ACTCGTGGCA CTGCCCGGGA CACTCGGGCG GCGTGGCGTT TTTGAAAAGC CCGCTTGGCC AGATGTTCCA TCAGTTTTTC GGCGAGAACA TGCTGCGCGC GGACGTCTGC AATGCCGTCG ACGAACTCGG CCAATTGCTC GATCACACGG GTCCGGTGGC GGCTTCGGAA CGCAACGCCG CGCGCATCTT TAGCGCCGAC CACGTGTTCT TCGTGACCAA CGGCACGTCC ACGTCGAACA AGATCGTCTG GCACGGCACG GTAGCGCCGG GCGACATCGT GCTGGTGGAC CGCAACTGCC ACAAGTCGAT TCTGCACGCG ATCACCATGA CCGGCGCGAT TCCGGTGTTC CTCACGCCCA CGCGTAACAA CTTCGGCATC ATCGGGCCGA TTCCGCGCAG CGAGTTCGAA CCGGAGAACA TCAAGAAGAA GATCCTGGCG AACCCGTTTG CCCGCGAAGC GCTCGCGAAG AATCCGAACC TCAAGCCGCG CATTCTGACT ATCACGCAAA GCACGTACGA CGGCGTGATC TACAACGTCG AGATGATCAA GGAGATGCTA GGCGACTGGC TCGACACGCT GCACTTCGAC GAAGCCTGGC TGCCGCACGC CGAGTTCCAC GAGTTCTATC AGGACATGCA CGCGATCGGC GCGGGCCGTC CGCGGATCGG CGCGATGGTG TTCGCCACGC ACTCCACGCA CAAACTGCTG GCCGGCATTT CGCAGGCTTC GCAGATCGTC GTGCAGGACT CGAAGAACAG CCGCTTCGAC AAGCATCGCT TCAATGAAGC GTATCTGATG CACACGTCGA CCAGCCCGCA GTACGCGATC ATCGCCTCGT GCGATGTGGC CGCGGCCATG ATGGAAGCGC CGGGCGGTCC TGCGCTGGTG GAAGAATCGA TCGCCGAAGC GCTCGATTTC CGCCGCGCCA TGATCAAGGT CGATGCCGAA TACGGCGACG ACTGGTTCTT CAAGGTGTGG GGCCCGGACC AGTTCGCCGA AGAGGGCATC GGTTCGCGCG AAGACTGGAT GCTGCGCCCG AACGACGAGT GGCACGGCTT CGGCCCGCTC GCCGACAACT TCAACATGCT CGACCCGATC AAGGCGACCA TCGTCACGCC GGGTCTGGAT ATGGGCGGCG GCTTCGGCGA GACTGGCATT CCGGCTGCGA TCGTCACGAA GTATCTGGCG GAACACGGCA TCATCGTTGA GAAGACCGGG CTGTATTCGT TCTTCATCAT GTTCACGATC GGCATCACGA AGGGCCGCTG GAATTCGATG GTCACCGAAC TCCAGCAGTT CAAGGACGAC TACGATAACA ACCAGCCGTT GTGGCGCGTG CTGCCGGAGT TCGTCTCGCA TCATCCGATG TATGAGCGCG TCGGCTTGCG CGATCTGTGC CAGCAGATTC ATAGCGTCTA CCGCGCGAAC GACATCGCGC GTCTGACCAC CGAGATGTAT CTGTCGAGCA TGGAACCGGC CATGAAGCCG TCGGATGCGT TCGCCAAGCT CGCGCACCGC GAGATCGACC GCGTGCCTAT CGACGAGCTC GAAGGCCGTG TCACGTCGAT CCTGCTGACG CCGTATCCGC CGGGCATTCC GCTGCTGATT CCGGGCGAGC GATTCAACAA GACCATCGTC AACTATCTGC GTTTCGCGCG CGAATTTAAC GAGCGCTTCC CGGGTTTCCA CACGGATATC CATGGGCTCG TCGGCGAAAC GATCAATGGG CGCATCGAGT ACTTCGTCGA TTGCGTTCGC GGCTGA
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Protein sequence | MKFRFPVVII DEDFRSENIS GSGIRALAEA IEKEGAEVLG LTSYGDLTSF AQQSSRASCF ILSIDDDELL PYVDNVVVEG ETPELAAAIV ALRAFVTEVR RRNADIPIFL YGETRTSRHL PNDILRELHG FIHMFEDTPE FVARHIIRET KVYLDSLAPP FFKELVQYAD EGSYSWHCPG HSGGVAFLKS PLGQMFHQFF GENMLRADVC NAVDELGQLL DHTGPVAASE RNAARIFSAD HVFFVTNGTS TSNKIVWHGT VAPGDIVLVD RNCHKSILHA ITMTGAIPVF LTPTRNNFGI IGPIPRSEFE PENIKKKILA NPFAREALAK NPNLKPRILT ITQSTYDGVI YNVEMIKEML GDWLDTLHFD EAWLPHAEFH EFYQDMHAIG AGRPRIGAMV FATHSTHKLL AGISQASQIV VQDSKNSRFD KHRFNEAYLM HTSTSPQYAI IASCDVAAAM MEAPGGPALV EESIAEALDF RRAMIKVDAE YGDDWFFKVW GPDQFAEEGI GSREDWMLRP NDEWHGFGPL ADNFNMLDPI KATIVTPGLD MGGGFGETGI PAAIVTKYLA EHGIIVEKTG LYSFFIMFTI GITKGRWNSM VTELQQFKDD YDNNQPLWRV LPEFVSHHPM YERVGLRDLC QQIHSVYRAN DIARLTTEMY LSSMEPAMKP SDAFAKLAHR EIDRVPIDEL EGRVTSILLT PYPPGIPLLI PGERFNKTIV NYLRFAREFN ERFPGFHTDI HGLVGETING RIEYFVDCVR G
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