| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_0934 |
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| Symbol | |
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| ID | 6284528 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | - |
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| Start bp | 1048323 |
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| End bp | 1052312 |
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| Gene Length | 3990 bp |
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| Protein Length | 1329 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642620494 |
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| Product | type VI secretion protein IcmF |
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| Protein accession | YP_001894577 |
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| Protein GI | 187922935 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAAGT TGTCGTTTCT GGTATCGCGC TGGTTCCTCG CGTTCCTCGC GCTGTTGGTC
CTCGGACTGT TGATCTGGTT TCTGGGGCCG TTCGTCGCGT TCGGCGGCCT CAAGCCTCTT
GTTAGCGTCG GCATGCGCGT CCTCGTGATC GCGCTGCTGC TCGTGGGCGC GCTGCTCTGG
CTCAAGGGCT GGTCGACCGG CGTGGTGTTC GGTGCGCTGC TGTGCCTGCT GGTCTGGTAC
GCAGGGCCGC TGTTGAGCTT CGGGCGTGCC GCGCCGTTGA CCTCCGTCGC GGCGCGCGTG
ATCGCCATTG GCGTCGTGCT GGCGCTTTTT GCCGCATTCG GTCTGTACTG GCTCTGGCAG
AAAATGCGCA GCGACGAAGC GTTCCTCAAA AAAGCGCTGA CGTTCGGCGG CAAGAAGGAG
ACGCCGCCGG CCGCCGGCAG GCTCAAAGAG GTCGAGGCTC GCATCAACGC CGCGCTCGCG
CGGCTGAAGT CCATGCGCAC GGGCGCGCGA GGCGTGGGGC GGCTCTTCCA GGGCACGCGG
TATCTGTACG AGCTGCCCTG GTTCATCGCG CTCGGCTCGA CCTCCTCCGG CAAGACGAGT
GCATTGCTGA ACGCCGGGCT GGCGTTTCCG ATTGGCGGCG CGACGCCGCG AACGGCCGGC
GCATCCGTCG GCACGAAGAA CATCGACTGG TGGCTGTCGA ACGATGCCGT TCTGATCGAT
ACCGCGGGCT ACTACACGCG ACATGGCGCA TCGACTCAGT CATTGCCCGC GCTCGCGGAC
AAACGCGCCG AAAACAAAGA CGACAACAAA GACGACAACG CCGGCTGCGG CACGGCCGCA
ACTCAGGGCA CGGATGCCGC AGTGGGCGAT GCCGACTGGC GTCGGCGTGT GGACGAAGAC
GAATGGCATG GCTTTCTCGA CCTGCTTCGC CGTCACCGCC CGCGCGCGCC GATCAACGGC
GCGGTGCTCG CAATCAGCCT CGACATACTG ACGGCCTCCG ACCCCGCGGT GCGCGCGACC
GAAGCCGACA TGCTGCGCGA ACGGCTGGCC GATTTGCGCA CCAGGCTGGG TATCCGCTTT
CCGGTGTACC TGATGATCAC GCAAATGGAC CGTTTGTCCG GGTTCGCCGA TTATTTCGGA
TCGCTGACCG AGGAACATCG CGCGCAGATG TGGGGATTCA CGCTCCCGGT CAACGGCCAA
TCGGCCCGGA GCGATCTCGC TGCGGTGTGC AACGGAGAAC TGAGGCAGCT TGTCACGCGT
CTCGCCGGCG GCGTGAACAC GCGGCTGGAA GACGAGTACG ACATCGAGCG CCGCCGGCGC
CTCGCGGCAC TGCCGGAAGC GTTCGCCGCG CTCTGCGCTC CGCTTGCCGA GTTACTGGGG
CAACTGTTCG TCGATTCACG TTACGACGCT ACGCAAAATC ACACGATGCT ACGAGGCGTC
TATTTCACGA GCGCATTGCA GGCCGGGCAA ACAGTCACTG CCGAACCGCT CACGGTCGTG
CAGCGTCTGA TGGCGGGGCG CAGTCGCCTG TTCTCGGCGG ACGCGGCGCG GCCCGCCGCG
AACCACAGCT ATTTTTTGCA CGATCTGTTC ACGAAGGTTG TCTTTCCCGA AGCGCATCTG
GTGCGGCCCA ATCTGCGCTG GGAGTACCGT TTCCGCCTGT TGCGGCTGCT CGGGCACACG
CTCGGCCTCG TATTGTTCGT GTGGCTCGCA ATGGGCATGC GCGTGAGCTT CGGCAATAAC
AGCGACTATC TGGATGCGAT CGCGCGCAAG AGCCAGGCAC TCGCGGCCAA GGTTACGCAG
CTTTACCGCG AGCCCAAACC GGAAGCCGTG CCGGACACGT TGGGCGAGGC GCGCTATCTG
CCGACCTGGA CAGGACTGGA TCTGTCGGAT CCCGACAGCC GCTTTCGCTA TGGCCTCTAC
AGCGCGCCGG GTGTCGTCGA GGCGAGCCGC GACACCTATC GCGCGCTCGA GGACAATCTG
CTGCTGCCGT CCATCGTTCA CCGCCTCGAA GACGTCATTG CTGAGTCGAT GGCGAACAAG
GATGCCAAAG CGACCTACGG CGCGTTGCGC GTCTACTTGA TGCTGTATGA CAAGGCGAGG
TTCAACTCGA CCGATATCAA AGCCTGGGTA CTCGACGACT GGGCAAAAAA CGACAGCGCG
TCGATCTTCG GCGGACGGGC TTCGATGATC GAACACGTCG AGCAGTTATT TTCCGGCGAG
CGTATCGTTC AGTCGCCGCT GATCCGCAAC GACGGCCTGA TTCAGCAGGC CCGCGCATTT
CTCGACGGCA GCAATGCCAC GCAGCGGCTC TACGAGCGCG CGAAGGCGGA CATGCAGAAG
GAGGCGCCCG ACGAGTTCAC GCTGCTTCGC GCGGTCGGAC CGCAGGCCGG CACGGTGTTC
ACGCGTGTCA GCGGCGCACC GCTCTCGCGC GGTGTGCCGG GCCTCTTTAC GTTCGACGGC
TACCAGAACC TGTTCGACAA GCGGCTGCCG GAGTTCGTCC AGGCAGCGCG CGACGACGAC
GCCTGGGTCA TGGGACGTTC GTATCTTGGC GAGGCTCAAA AAAAAACGGC TGAAATCGTA
AGCACGGTAA CGGGCGCCGA CGATCCGCTG ACGGAAGCCA TCCGCCGGCT CTATCTGACC
GAATACGCGC AGCAATGGGA CGCTTTCCTC GGCGATATCC GCACGGTCGC CGGTACCAGC
CTTGCCTTCA ATCTGCAGGT GCTGCGCCAG TTCGCTGCAC CCGATTCGCC GCTGGCGCGC
CTCGCTCGCG CAGCCGTGCA TGAAACGACG CTCACCCAGT CGATCGCCGC CGCCAATGGT
TCTCTGCTGC AGAAAACGAC CGACCAGTTC AGTCAGAAAG CGGATAAGGC GCTGGGCATC
CGCGCGGAAG AGCGCGTCGA GCGCGAACTG GTGGACGGCC ATTTCGCCGC GCTGCGCGAG
ATGGTCACAG GCAGCGCCGA CACCTCGGCC GCCGAGGCGC CGGCCAATGC TCAAGCCGGC
AAGACAGGTC TCGACGGCGT AACGAGCCTG CTCAACGATT ACTACACCAC ACTGACGGTC
GCGGATAACG CGATCGCGAA CAACAGCATG CCGCCCGCCA GCGATGCCGC GGCAAAACTG
AAAATGGCGG CCAACACCAT GCTGGCGCCC TTTCGCGACG TGTTGCTCGG CCTCTCGGTG
CAGGGTTCGC GCGAAGTCAA TCAGGGCATC GGGCAACTGC TTTCGCGGCA GATGCAGGCC
GTGGTCAGCG ATACGTGCCG AATGACCGTG GAGGGCAACT ATCCTTTTGC GCCGGACAGT
CCGCGCGACG TGAGTGTCGA CGACTTCACA CGCGTATTCG CACAGGGCGG CGTGATCGAC
GACTTCTTCA CGAAGAACCT CGCACCGTTC GTCGATACCT CGGCGAAGCC GTGGCGCTAC
AGAACGCTGC CGGGCGCCAC CGATCCCGTA CGGGGCCCCG ACCTCGAACC ATTCCAGCAC
GCGAGGCAAA TCCGCGACGT GTTCTTCGGC GACCAGGGCA AGCAACTTCT TTGGAAAACT
GACATCCGCG TGCCCGAACT CGATCCGACC GTGACGACGC TGGCAATCGA CATCGACGGT
CAGACCATGC TGTATCAGCA CGGACCCGTC GCACCATTCG CGGTGAGCTG GCCTGGGCCG
CGCGGCGGCG TGCATGCCGA AATGACCGCG AGCCCACGCA TTCGCAATGA AACCTCGACG
CTCGTGACGG ACGGCCCGTG GGCACTCATG CGTTTGCTGC GCAAGGGGCA GATTGTCCAG
ACGGCCACGC CGGGGCGCAC CCGCGCGGAG TTCGATTTCG ACGGACGCAA GGCGGTGCTC
GATATCACCG GTGCGGGCAG CGTCGCCAAC CCGCTGACCA GCGAAGTGCT CACGACCTTC
CGTTGCCCGA ATTCGATGTC GATGTTCAGC CTGCCTGACA GCGGGCCGCC GCCCGGCTTG
CCGGCGGCGG ATGCCGACCG CGCTCATTGA
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| Protein sequence | MKKLSFLVSR WFLAFLALLV LGLLIWFLGP FVAFGGLKPL VSVGMRVLVI ALLLVGALLW
LKGWSTGVVF GALLCLLVWY AGPLLSFGRA APLTSVAARV IAIGVVLALF AAFGLYWLWQ
KMRSDEAFLK KALTFGGKKE TPPAAGRLKE VEARINAALA RLKSMRTGAR GVGRLFQGTR
YLYELPWFIA LGSTSSGKTS ALLNAGLAFP IGGATPRTAG ASVGTKNIDW WLSNDAVLID
TAGYYTRHGA STQSLPALAD KRAENKDDNK DDNAGCGTAA TQGTDAAVGD ADWRRRVDED
EWHGFLDLLR RHRPRAPING AVLAISLDIL TASDPAVRAT EADMLRERLA DLRTRLGIRF
PVYLMITQMD RLSGFADYFG SLTEEHRAQM WGFTLPVNGQ SARSDLAAVC NGELRQLVTR
LAGGVNTRLE DEYDIERRRR LAALPEAFAA LCAPLAELLG QLFVDSRYDA TQNHTMLRGV
YFTSALQAGQ TVTAEPLTVV QRLMAGRSRL FSADAARPAA NHSYFLHDLF TKVVFPEAHL
VRPNLRWEYR FRLLRLLGHT LGLVLFVWLA MGMRVSFGNN SDYLDAIARK SQALAAKVTQ
LYREPKPEAV PDTLGEARYL PTWTGLDLSD PDSRFRYGLY SAPGVVEASR DTYRALEDNL
LLPSIVHRLE DVIAESMANK DAKATYGALR VYLMLYDKAR FNSTDIKAWV LDDWAKNDSA
SIFGGRASMI EHVEQLFSGE RIVQSPLIRN DGLIQQARAF LDGSNATQRL YERAKADMQK
EAPDEFTLLR AVGPQAGTVF TRVSGAPLSR GVPGLFTFDG YQNLFDKRLP EFVQAARDDD
AWVMGRSYLG EAQKKTAEIV STVTGADDPL TEAIRRLYLT EYAQQWDAFL GDIRTVAGTS
LAFNLQVLRQ FAAPDSPLAR LARAAVHETT LTQSIAAANG SLLQKTTDQF SQKADKALGI
RAEERVEREL VDGHFAALRE MVTGSADTSA AEAPANAQAG KTGLDGVTSL LNDYYTTLTV
ADNAIANNSM PPASDAAAKL KMAANTMLAP FRDVLLGLSV QGSREVNQGI GQLLSRQMQA
VVSDTCRMTV EGNYPFAPDS PRDVSVDDFT RVFAQGGVID DFFTKNLAPF VDTSAKPWRY
RTLPGATDPV RGPDLEPFQH ARQIRDVFFG DQGKQLLWKT DIRVPELDPT VTTLAIDIDG
QTMLYQHGPV APFAVSWPGP RGGVHAEMTA SPRIRNETST LVTDGPWALM RLLRKGQIVQ
TATPGRTRAE FDFDGRKAVL DITGAGSVAN PLTSEVLTTF RCPNSMSMFS LPDSGPPPGL
PAADADRAH
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