| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_0902 |
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| Symbol | |
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| ID | 6283766 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | + |
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| Start bp | 1009626 |
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| End bp | 1011503 |
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| Gene Length | 1878 bp |
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| Protein Length | 625 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642620463 |
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| Product | polysaccharide biosynthesis protein CapD |
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| Protein accession | YP_001894546 |
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| Protein GI | 187922904 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 56 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTCGAC ACAAAGCCTC ATGGCTATCA TTTAGCGCTT TCGCCTTCGA CCTTTGCGCC
GTCGCCGGTG CGTGGCTCGC CGCTTATCTC ATCCGCTTCA ATGGCTACGT ACCAGACGAG
TTCTGGTCCG GCGCCGTCCG AACCCTCATC TGGGTCCTGC CCGTCTACGG TGTGATGTTC
CGCATCTTCG GCCTCTATCG GGGCATGTGG GTGTTCGCGA GTCTGCCGGA CCTGATGCGC
ATCGCCAAGG CCGTGATGGC CGGCGCATTC ACGATGATGA TGGTGGCCGT CATGGCCCAG
CCGCATCCCA TCATTCCGCG CTCCGTACTC GCTGTTTCTC CGCTTCTCCT GTTCCTTGCC
ATGGGCGGCT CGCGCGCGCT CTATCGCGCG TCGAAAGAGT TCTATCTGTA CGGCGGCCTC
GTCGGACAAG GCAAGCCGGT GGTGGTGCTC GGCGCGGGCA ACGCGGGCGC GAGCCTCGCC
CGTGAGCTGT CGCGCTCGAG CGAATGGCGG CTGGTGGGCC TGCTCGACGA CGACCCCGCC
AAGCAGGGCC GCGAAATTTA CGGCTACAAG GTGTGGGGGC CGATCAGCGA CCTGCAGCAC
TGGGCTTCGG ACATGAAGGT CGAGCATGCG ATCATCGCCA TTCCGTCGGC GTCGGTCGAT
GCGCAGCGTC GCGTGGCAAC GCTATGCGTG CGCGCCGGCG TGCGGGCCAT GGTGCTGCCC
GCGCTGACCA CGCTGACGCA AGGCGAAGCG TTCCTGTCGC GCGTGCGGCA GATCGATCTG
GAAGATCTGC TGGGCCGCGA GCCGGTACGT ATCGACATGC CGCACGTCGA AGCGCTGTTG
AGCGGCCGCG TGGTGATGGT GACCGGCGCG GGCGGCTCGA TCGGCTCGGA GTTGTGCCGC
CAGATTCTGC GCTTCGAACC CGCGCAGTTG ATCGCGTTCG ATCTGTCCGA ATACGCGATG
TACCGTCTCA CGGAAGAATT GCATGACCGC TTTCCGAAGC TCTCCGTGGT GCCGGTGATT
GGCGACGCCA AAGATTCCTT GCTGCTCGAC CAGGTGTTGT CGCGCTACAC GCCGCACATT
CTCTTTCACG CCGCGGCCTA CAAGCATGTG CCGCTGATGG AGGAGTTGAA CGCATGGCAG
GCGGTGCGCA ACAACGTGCT GGGCACATAC CGTGTCGCGC GCGCGGCGAT TCGCCACGAC
GTGAAGCATT TCGTGCTGAT CTCCACCGAC AAGGCGGTGA ACCCGACCAA CGTGATGGGC
GCAAGCAAGC GCCTCGCGGA AATGGCTTGC CAGGCGCTGC AGCAGACCAG TACGCGCACG
CAGTTCGAAA CGGTGCGCTT CGGCAACGTG CTCGGCAGCG CGGGCAGCGT GATTCCCAAG
TTTCAACAAC AGATCGCGAA GGGTGGGCCG GTCACGGTCA CGCATCCGGA GATCACGCGC
TTTTTCATGA CGATCCCCGA AGCCTCGCAA CTCGTGCTGC AAGCGTCGAG CATGGGGCAT
GGCGGTGAGA TCTTCATTCT CGACATGGGC GAGCCGGTCA AGATCGTCGA TCTCGCGCGC
GACCTGATTC GCCTGTATGG CTTCAGCGAG GAACACATCC GCATCGTGTT CACGGGCCTG
CGTCCGGGCG AGAAACTCTA CGAGGAACTG CTGGCCGACG ACGAAGCCAC CACGCGCACG
CCGCATCCAA AGCTGCGCAT CGCTCAGGCG CGTGAAGCGC CCGACAATCT CCTCGACGAA
CTGCTGCCGT GGCTGATGCA GCATCGTGTG CCGAGCGACC AGGAAGTGCG CCGCGATCTG
CGGCGCTGGG TGCCGGAGTA TCAGCCGGCC GCCACGCCGG CGTTGCATAG CGTGGCGTCG
GCGACGCGGG CTTCGTGA
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| Protein sequence | MFRHKASWLS FSAFAFDLCA VAGAWLAAYL IRFNGYVPDE FWSGAVRTLI WVLPVYGVMF
RIFGLYRGMW VFASLPDLMR IAKAVMAGAF TMMMVAVMAQ PHPIIPRSVL AVSPLLLFLA
MGGSRALYRA SKEFYLYGGL VGQGKPVVVL GAGNAGASLA RELSRSSEWR LVGLLDDDPA
KQGREIYGYK VWGPISDLQH WASDMKVEHA IIAIPSASVD AQRRVATLCV RAGVRAMVLP
ALTTLTQGEA FLSRVRQIDL EDLLGREPVR IDMPHVEALL SGRVVMVTGA GGSIGSELCR
QILRFEPAQL IAFDLSEYAM YRLTEELHDR FPKLSVVPVI GDAKDSLLLD QVLSRYTPHI
LFHAAAYKHV PLMEELNAWQ AVRNNVLGTY RVARAAIRHD VKHFVLISTD KAVNPTNVMG
ASKRLAEMAC QALQQTSTRT QFETVRFGNV LGSAGSVIPK FQQQIAKGGP VTVTHPEITR
FFMTIPEASQ LVLQASSMGH GGEIFILDMG EPVKIVDLAR DLIRLYGFSE EHIRIVFTGL
RPGEKLYEEL LADDEATTRT PHPKLRIAQA REAPDNLLDE LLPWLMQHRV PSDQEVRRDL
RRWVPEYQPA ATPALHSVAS ATRAS
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