Gene Bphyt_0609 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_0609 
Symbol 
ID6282338 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010681 
Strand
Start bp659698 
End bp662571 
Gene Length2874 bp 
Protein Length957 aa 
Translation table11 
GC content62% 
IMG OID642620174 
Productexcinuclease ABC, A subunit 
Protein accessionYP_001894258 
Protein GI187922616 
COG category[L] Replication, recombination and repair 
COG ID[COG0178] Excinuclease ATPase subunit 
TIGRFAM ID[TIGR00630] excinuclease ABC, A subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.386582 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.048507 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGAACAAA TCCGTATTCG TGGGGCTCGC ACCCACAACC TGAAGAACGT CAACCTCGAT 
CTACCCCGTC ACAAGCTCGT TGTCATCACG GGCCTTTCAG GCTCGGGCAA ATCGTCGCTG
GCGTTCGACA CGCTTTATGC GGAAGGGCAA CGGCGCTACG TCGAAAGTCT CTCCGCCTAC
GCGCGCCAAT TTCTGCAATT GATGGAGAAA CCGGACGTCG ATCTGATTGA AGGCCTGTCG
CCGGCGATCT CGATCGAACA GAAGGCGACC TCGCACAATC CGCGCTCCAC GGTCGGCACC
GTCACCGAGA TTCACGACTA TCTGCGGCTC CTGTTCGCAC GGGTCGGCAC GCCTTACTGT
CCGGACCACG AAATTCCGCT GGAAGCGCAA AGCGTCTCGC AGATGGTCGA CGCCGCGCTC
GCGTTGCCGG AAGAAACGAA GCTCATGATT CTCGCGCCCG TCGTGGCGAA TCGCAAAGGC
GAGCACGTCG AACTGTTCGA GGAGATGCAG GCGCAAGGCT TTATCCGCTT CCGCGTGCGC
TCGGGCGGCG GCACCGCCAA TGAAGGCGTC GCGAAGATCT ATGAAGTCGA TTCGCTGCCG
AAGCTGAAGA AGAACGACAA GCACACCATC GACGTGGTCG TGGACCGCCT GAAAGTGCGT
CCCGACATGA AGCAGCGTCT GGCCGAATCG TTCGAAACGG CACTGCGTCT CGCCGACGGC
CGCGCGATCG CGCTCGAAAT GGACACGGAC AAGGAGCATC TGTTCAGTTC GAAGTTCGCT
TGCCCGATCT GCTCGTACTC GCTGCAGGAA CTGGAGCCGC GCCTCTTCTC GTTCAACAAT
CCGATGGGCG CGTGCCCGGA ATGCGACGGG CTCGGCCAGA TCACCTTCTT CGATCCGAAG
CGGGTGGTCG CGCATCCGTC GCTGTCGCTC GCGGCGGGCG CGGTGAAGGG CTGGGACCGG
CGCAACCAGT TTTACTTCCA GATGCTGCAG AGTCTCGCGG CGTTCTACGA ATTCGACATC
GACACGGCCG TCGAAGACTT GCCGGAGAAA GTCCGCAAGA TCCTGCTGTT CGGTTCGGGC
AAGCAGGAGA TCCCGTTCTC GTACATCAAC GAACGTGGCC GCACTTCGGT GCGCGAGCAT
GTATTCGAAG GGATCATCCC GAATCTGGAG CGGCGTTACC GCGAGACCGA TTCGGTCGCG
GTACGCGAAG AACTCGCCAA GTATCAGAAC AACCAGCCCT GCCCGGCCTG CGCCGGCACG
CGTCTGCGGC GCGAAGCGCG CTTCGTGCGG ATCGGCTCAG ACGGCGATGC GCGCGGCATC
TTCGAGATCA GCGGCTGGCC GTTGCGCGAC GCGCTCGGCT ATTTCCAGAC GCTGCGCCTG
GAAGGATCGA AGCGCGAGAT CGCCGACAAG GTGGTCAAGG AGATCGTCGC GCGTCTGATG
TTCCTGAACA ACGTCGGGTT GGATTACCTG TCGCTGGAGC GCAGCGCGGA AACGCTGTCC
GGCGGCGAGG CGCAGCGCAT TCGCCTCGCG TCGCAAATCG GCTCAGGGCT GACCGGCGTG
ATGTACGTGC TGGACGAGCC GTCCATCGGA CTGCATCAGC GCGATAACGA CCGGCTCATC
GCCACGCTCA AGCATCTGCG CGACCTCGGC AACTCGGTGA TCGTCGTCGA ACACGACGAG
GACATGATCC GCATGGCCGA CTACGTGGTC GACATGGGCC CGGGTGCGGG CGAACACGGC
GGCATGGTGA TCGCCGAGGG CACGCCCAAA CAGGTGCAGG CGAACGCCGC GTCGATGACC
GGGCAGTACA TGTCCGGCGC GCGCAACATC GAGTTCCCGG ACGAACGCAA GGCGCCCGAC
GAAAAGCGTC TGCGCATCGT CGAGGCGTAC GGCAACAATC TGCAGCACGT GTCGCTGGAT
CTGCCGGTCG GCTTGCTGAC CTGCGTGACC GGCGTGTCCG GTTCGGGCAA GTCCACGCTC
ATCAACGACA CGCTGTACCA CGCGGTCGCG CATCACCTGT ACGGCTCGGC CACGGAGCCG
GCGCCGTACG AATCGATCGA GGGCCTCGAG CACTTCGACA AGGTCATCAA CGTCGACCAG
TCGCCGATCG GCCGCACGCC GCGCTCGAAC CCGGCCACCT ACACAGGTCT CTTCACGCCG
ATCCGCGAAC TGTTCGCGGG CGTGCCCGCG GCCAAAGAAC GCGGCTACGA AGCCGGCCGC
TTTTCGTTCA ACGTAAAGGG CGGCCGCTGC GAATCCTGCC AGGGCGACGG CGTGCTGAAG
GTCGAGATGC ACTTTTTGCC GGACGTGTAC GTGCCGTGCG ACGTCTGTCA TGGCAAGCGC
TACAACCGCG AAACACTGGA CGTGCAGTAC AAAGGCAAGA ACATCAGCGA AGTGCTCGAC
ATGACGGTGG AGAACGCCTA TGAGTTCTTC AAGCCAGTGC CGGTCGTCGC TCGCAAGCTG
AAAACCTTGC TGGACGTGGG TCTGGGCTAT ATCCGGCTGG GCCAGTCGGC CACCACGCTG
TCGGGCGGCG AGGCACAGCG CGTCAAACTA TCTTTGGAAC TGAGCAAGCG TGACACGGGT
CGCACGCTAT ACATACTCGA CGAGCCGACC ACCGGTTTGC ACTTTCATGA CATCGCGTTG
TTGCTCGAAG TGATTCATCG ATTACGCGAC CAGGGTAATA CCGTCGTGAT CATCGAGCAT
AATCTCGATG TAATAAAGAC TGCGGACTGG GTCATCGATC TCGGTCCGGA AGGCGGGGCC
GGCGGCGGGC AGATCATCGC TCAGGGCACG CCGGAGCAGG TGGCCAAGTC GAAGGCAAGT
TTTACCGGCA AGTACCTGGC GCCTCTGCTG AAACGCGCGG CCAGTAAAAA GTAA
 
Protein sequence
MEQIRIRGAR THNLKNVNLD LPRHKLVVIT GLSGSGKSSL AFDTLYAEGQ RRYVESLSAY 
ARQFLQLMEK PDVDLIEGLS PAISIEQKAT SHNPRSTVGT VTEIHDYLRL LFARVGTPYC
PDHEIPLEAQ SVSQMVDAAL ALPEETKLMI LAPVVANRKG EHVELFEEMQ AQGFIRFRVR
SGGGTANEGV AKIYEVDSLP KLKKNDKHTI DVVVDRLKVR PDMKQRLAES FETALRLADG
RAIALEMDTD KEHLFSSKFA CPICSYSLQE LEPRLFSFNN PMGACPECDG LGQITFFDPK
RVVAHPSLSL AAGAVKGWDR RNQFYFQMLQ SLAAFYEFDI DTAVEDLPEK VRKILLFGSG
KQEIPFSYIN ERGRTSVREH VFEGIIPNLE RRYRETDSVA VREELAKYQN NQPCPACAGT
RLRREARFVR IGSDGDARGI FEISGWPLRD ALGYFQTLRL EGSKREIADK VVKEIVARLM
FLNNVGLDYL SLERSAETLS GGEAQRIRLA SQIGSGLTGV MYVLDEPSIG LHQRDNDRLI
ATLKHLRDLG NSVIVVEHDE DMIRMADYVV DMGPGAGEHG GMVIAEGTPK QVQANAASMT
GQYMSGARNI EFPDERKAPD EKRLRIVEAY GNNLQHVSLD LPVGLLTCVT GVSGSGKSTL
INDTLYHAVA HHLYGSATEP APYESIEGLE HFDKVINVDQ SPIGRTPRSN PATYTGLFTP
IRELFAGVPA AKERGYEAGR FSFNVKGGRC ESCQGDGVLK VEMHFLPDVY VPCDVCHGKR
YNRETLDVQY KGKNISEVLD MTVENAYEFF KPVPVVARKL KTLLDVGLGY IRLGQSATTL
SGGEAQRVKL SLELSKRDTG RTLYILDEPT TGLHFHDIAL LLEVIHRLRD QGNTVVIIEH
NLDVIKTADW VIDLGPEGGA GGGQIIAQGT PEQVAKSKAS FTGKYLAPLL KRAASKK