| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_0501 |
|---|
| Symbol | |
|---|
| ID | 6281784 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | - |
|---|
| Start bp | 552604 |
|---|
| End bp | 553572 |
|---|
| Gene Length | 969 bp |
|---|
| Protein Length | 322 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642620065 |
|---|
| Product | DNA-binding transcriptional activator GcvA |
|---|
| Protein accession | YP_001894150 |
|---|
| Protein GI | 187922508 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.0370633 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACCTTC GGCAATTGCC CGCCCTGAAC GCGATCAAGG CATTCGAGGC CGCCGCCCGC
CACGAAAGCT TTTCGCGCGC AGCCGACGAG CTCTTCGTCA CCCACGGCGC CGTCAGCCAC
CAGATCCGCG CGCTCGAAGC CGACCTCGGC GTCTCGCTGT TCGCGCGCGA CGGCAAACGC
GTGCGGCTCA CCGAGACCGG CCGGCGCTAC GCCACGCACG TGCGCTCTGC CCTCATGGCG
CTCGCCGACG CCACCCGCGA AATCCGCGCC GGCGATCGCG AGCGGCGCCT CGTGGTGTCG
ATGCTGTCGT CATTTGCGGC GCGCTGGGTG ACGCCGCGCG TCGGCAGTTT TATCGAGGCG
CATCCGCAGT GGGACCTCGA GCTGCTGTCT ACCAACGCGC TCACGGACTT CGCGCGGGAC
GACGTCGACG TGGCGATCCG TTTCGGCTTC GGCAAATATC CGGGTCTGCA TTCGGAGTTG
TTGCTGGAGG AGATTTTCTT TCCCGCCTGC GCGCCGAATT TCAACGGCGG CAAGCTGCCC
CAAACCCCGG CCGATCTGGC CAAAGTCACC CTGCTGCGTT CCGACGACGA ACTCTGGCGC
CCCTGGTTCG ACGCCGCCGG CCTCACCGAG TGGCCTGAGC CGAAGCGCGG CGTGCTGTAC
CAGGATTCGT CGAATCTTCT GCAGGCCGCC ATCGACGGTC AGGGTGTCGC GCTCACGCGC
CGCTCGCTGG CCATGCCCGA AATCGCGGCA GGCCGCCTCG TGCGGCTTTT CGATGTGGAT
GGGCCGAGCC CATGGCAGTA CTACTTCATC TGCACGCCGC AGATGCTCGA AACCGCCCGT
GTGAAAGCGT TTCGCGACTG GGTATTCGAG GAGGTGGGAC GCTTCAAGCA GCTTTTCGAC
CGGGCGTGCG AACTACGACC CGCAGCAAGC GCCGATCGAT CGGCGAACGC ATTGCGCGTC
ACGCCGTAA
|
|---|
| Protein sequence | MDLRQLPALN AIKAFEAAAR HESFSRAADE LFVTHGAVSH QIRALEADLG VSLFARDGKR
VRLTETGRRY ATHVRSALMA LADATREIRA GDRERRLVVS MLSSFAARWV TPRVGSFIEA
HPQWDLELLS TNALTDFARD DVDVAIRFGF GKYPGLHSEL LLEEIFFPAC APNFNGGKLP
QTPADLAKVT LLRSDDELWR PWFDAAGLTE WPEPKRGVLY QDSSNLLQAA IDGQGVALTR
RSLAMPEIAA GRLVRLFDVD GPSPWQYYFI CTPQMLETAR VKAFRDWVFE EVGRFKQLFD
RACELRPAAS ADRSANALRV TP
|
|---|
| |