| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_0440 |
|---|
| Symbol | |
|---|
| ID | 6282057 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | - |
|---|
| Start bp | 488141 |
|---|
| End bp | 489067 |
|---|
| Gene Length | 927 bp |
|---|
| Protein Length | 308 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642620004 |
|---|
| Product | hydroxymethylglutaryl-CoA lyase |
|---|
| Protein accession | YP_001894089 |
|---|
| Protein GI | 187922447 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCCTAC CTCAGCAAGT GAAAATCGTC GAAGTCGGTC CGCGTGACGG ACTTCAGAAC
GAAAAAGACT TCGTGCCCAC CGCGATCAAG ATCGAGCTGA TCAACCGTCT GTCTGCGGCG
GGCTTTCGTA ACGTCGAGGC CGCTTCGTTC GTGTCGCCGA AATGGGTGCC GCAGATGGCC
GACGGCGCCG ACGTGATGGC CGGCATCGAA CGCCGTCCCG GCACGATCTA CTCGGTGCTG
ACGCCGAATC TGCGCGGCTT CGAGGGCGCG CTCGCCGCGC GTGCCGACGA GATCGTGATT
TTCGGCGCCG CCAGCGAAGC GTTCTCGCAG AAAAACATCA ACTGCAGCAT CGCGGAAAGC
ATCGATCGGT TCGTGCCGGT TGCGCAGGCG GCGAAGGAGC ATGGCCTGCG GATTCGCGGC
AGCGTGTCGT GCGCATTGGG CTGTCCGTAT CAGGGCGAAG TGCCGGTGGC GTCGGTCGTG
GATGTGGTCC AGCGCTTCGC GGCGCTCGGC TGCGACGAGA TCGATATCGC CGATACGATC
GGCGTGGGCA CACCAAAGCG CGCGCGTGAA GTGTTCGAGG CGGTCACGCA GGTGTTTCCG
CGCGAGCGTC TATCCGGCCA CTTCCATGAC ACCTATGGCC AGGCGCTCGC CAACATCTAC
GCGGCGCTGC AGGAAGGCAT CGAGATTTAT CACGCGTCGG TGGCGGGCCT CGGCGGCTGT
CCGTATGCGA AGGGCGCGAC GGGCAACGTC GCGACCGAAG ACGTGCTGTA TCTGATGAAT
GGCCTCGGCA TCGAAACCGG CATCGACCTC GCGCAAGTCG TGGCGATCGG CGATTTCATC
TCGACGTCGA TCGGCCGGCC CAATGTTTCG CGCGCCGGCA AAGCGCTGCT CGCCAAAGCG
CGCAGCGAAG CGGCCAACTG CGTTTGA
|
|---|
| Protein sequence | MALPQQVKIV EVGPRDGLQN EKDFVPTAIK IELINRLSAA GFRNVEAASF VSPKWVPQMA
DGADVMAGIE RRPGTIYSVL TPNLRGFEGA LAARADEIVI FGAASEAFSQ KNINCSIAES
IDRFVPVAQA AKEHGLRIRG SVSCALGCPY QGEVPVASVV DVVQRFAALG CDEIDIADTI
GVGTPKRARE VFEAVTQVFP RERLSGHFHD TYGQALANIY AALQEGIEIY HASVAGLGGC
PYAKGATGNV ATEDVLYLMN GLGIETGIDL AQVVAIGDFI STSIGRPNVS RAGKALLAKA
RSEAANCV
|
|---|
| |