Gene Bphyt_0164 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_0164 
Symbol 
ID6281708 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010681 
Strand
Start bp178278 
End bp179435 
Gene Length1158 bp 
Protein Length385 aa 
Translation table11 
GC content66% 
IMG OID642619738 
ProductTrbL/VirB6 plasmid conjugal transfer protein 
Protein accessionYP_001893827 
Protein GI187922185 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3704] Type IV secretory pathway, VirB6 components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.745375 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGGCC TCTTTACCGC CGTGGGCGGC ACGCTCGAGA ACGGCATGTC CACGTATGTC 
ACGAGCGTGT CCTCTGCGCT TTCCAGCGCG CTGGTGCCGG TCGTCACGAC CGCAGTGTCG
ATCTGGATCA TCACGTACGG GTTCGCCGTG GTGCGCGGCG AAGCCCATGA ATCCGTCCCG
GCATTCGCGT GGCGGGGGCT GAAGGTGGCC GTCATCCTCG CCTTTGCGCT CGGGTCGGGC
ATCTACCAGT CGCAGGTCGT CACCGTAGTC GAAGGGGCCA CGACGGGGCT TGCGCAGACG
ATCCAGACCG CCGCCGCCAA CGCGGGAGCG GGTAACGCCG GCTGCGGGAC TGTGAGCGGC
AGCAGCGTGA CGGGCACGAG TGCATCCGCC ATTTACCAGA CGCTCGACTG CTACGACCAG
CAGATCAATC TGGTGATGGA TGCGTACTTC AACAAGGCAA CGCATGAAGG CTTCAGCATC
GCCGGCATCG TCGCAGGGGT GGGCGATTTT CTCTGCGGGC TGGTGGCGGC GCTCGGCGCG
TCGGTCTTCC TGATCATTCT CGCGTTCGAG GTCGTCATGG CGAGGATGCT GCTGGATCTC
GTGCTTGGCC TTGGGCCCCT GTTCATTGCG TGCGGGGCGT TCAGTCCGAC CGCCCGGTTC
TTCGAGGCGT GGATGGCCAA GATTGCCAAC TACGCCCTGC TGCAGGTGCT CATCGCGGCC
TTTCTGGGCA TGGCGCTCAC CGCATTTTCT GCGGATCTTG CTCCGTTTCA GGTGACGACG
TCGGCACCCG ATGCGAACGC GTCTGCGTTG ACGGCGGCGA TTCAGGGCGC ACTCGATAAC
ACGGCGTCCT GGGGGGCGGG GCTTGGCATG TTTGTGACGG GCGTGCTGCT GGCGACAGTG
GGGTGGCAAC TGCCTGCCGT CGCCTCTGGC CTGGCGGGTG GCGCCACGCT GTCCGGCTTC
GGTGCCTTCG TGGCGGGATA TGCCGCGCGG CAGGCTCTGC GCGGCCTCGG GGCGGCCGTC
CAGTTCGGGC ACGGGCCGCG TCGCCCCGGT GGAAAGATTT CGGATGGCGG CACACGAAAC
GGTTCAACAC CTGCCTACCA GCGTATCGCC CGCGAGCATC TGGGTGACCT GGATAACAGA
GGAGGGTCAT CGTCATGA
 
Protein sequence
MSGLFTAVGG TLENGMSTYV TSVSSALSSA LVPVVTTAVS IWIITYGFAV VRGEAHESVP 
AFAWRGLKVA VILAFALGSG IYQSQVVTVV EGATTGLAQT IQTAAANAGA GNAGCGTVSG
SSVTGTSASA IYQTLDCYDQ QINLVMDAYF NKATHEGFSI AGIVAGVGDF LCGLVAALGA
SVFLIILAFE VVMARMLLDL VLGLGPLFIA CGAFSPTARF FEAWMAKIAN YALLQVLIAA
FLGMALTAFS ADLAPFQVTT SAPDANASAL TAAIQGALDN TASWGAGLGM FVTGVLLATV
GWQLPAVASG LAGGATLSGF GAFVAGYAAR QALRGLGAAV QFGHGPRRPG GKISDGGTRN
GSTPAYQRIA REHLGDLDNR GGSSS