| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_4872 |
|---|
| Symbol | |
|---|
| ID | 6285077 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010678 |
|---|
| Strand | + |
|---|
| Start bp | 1219733 |
|---|
| End bp | 1220881 |
|---|
| Gene Length | 1149 bp |
|---|
| Protein Length | 382 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642619348 |
|---|
| Product | cytochrome c oxidase subunit II |
|---|
| Protein accession | YP_001893383 |
|---|
| Protein GI | 187927038 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1622] Heme/copper-type cytochrome/quinol oxidases, subunit 2
[COG4654] Cytochrome c551/c552 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.780427 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.052805 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCCTTG CGATTGCGCT CTTGCTGATC GTCGTGCTGG CGGTGGGGTT TCACGTTGCC
AGCCCGTGGT GGATCACGCC AATCGCCTCC AACTGGAGTC GCATGGACGA CACGCTGGCG
ATCACCCTCG TCATTACCGG TGTGTTGTTC ATCGCCATCA ATCTCTTCGT CGTGGCAGCG
CTCTGGCGCT ACCGCCACCG CGAAGGCCAC CGCGCCGCCT ACGAACCCCA CAACAAGCGC
CTGGAATGGT GGCTCGTCGG CATCACCACG GCGGGTGTCG CGGCGTTGCT GGCCCCCGGC
CTGTTCGTCT ATGCCGACTA CGTGCGCCCG CCGCCCAATG CGCTGCGGAT GGAAGTGCTC
GGCCAGCAGT GGCAATGGCG GTTCCGCTTT CCCGGCCCTG GCGGAAAGCT GGGCACGACC
GACGTGCGCT ACATCACCGA CGACAATCCG TTCGGCATGA ACCCCGCAGA CCCCAACGGG
CGCGACAACT ACCTCATTGA CACGCCCGAA CTGCATCTCC CGCTCAACCG CCCGATCCAG
GTGCTGGCGC GCTCGCGCGA CGTGCTGCAC GACTTCTATG TGCCGCCCTT CCGTGCCCGC
ATGAACATGG TGCCCGGCAT GGTCACGACG TTCTGGTTCA CACCCACCAA GGCGGGGCGC
TATGACATTC TCTGCGCGCA GCTTTGCGGC ATCGGTCACT CGAACATGCG CGGCGTGGTG
GTGGTGGAGG ATGAAGCTGC ATTCACCCGT TGGCTGGCGC GGCAAACGAC GTTCGAGCAG
AGCCTGCAGG CAAAGGTGCA AGCCACGCCG GCTGCGGCAG GCGGCAGCGC GCAGGCGTTG
GCGGACCAGG GCAAGGCGCT CGCGCAGGCG AAGGGCTGCG TCGCTTGTCA TAGCGTGAAC
GGCAACCCCG GTGTCGGCCC CACGTGGAAA GACCTGTACG GCTCCACGCA GACCATGGCC
GATGGCACAA CCGCCGTGGC TGACGAGGCC TATCTGCGCG CCTTCATTCG CGACCCCAAG
GCGCGCGTGG TCAAGGGCTT CGCACCGATC ATGCCGAACT TCAACCTGAG CGAGCAGGAG
TTGTCTGCGC TCATCGCTTA CATCAAGGCA CAGGGTGGCC CCGCGCCCGC CAGCGCGGCC
AAACCGTAG
|
|---|
| Protein sequence | MALAIALLLI VVLAVGFHVA SPWWITPIAS NWSRMDDTLA ITLVITGVLF IAINLFVVAA
LWRYRHREGH RAAYEPHNKR LEWWLVGITT AGVAALLAPG LFVYADYVRP PPNALRMEVL
GQQWQWRFRF PGPGGKLGTT DVRYITDDNP FGMNPADPNG RDNYLIDTPE LHLPLNRPIQ
VLARSRDVLH DFYVPPFRAR MNMVPGMVTT FWFTPTKAGR YDILCAQLCG IGHSNMRGVV
VVEDEAAFTR WLARQTTFEQ SLQAKVQATP AAAGGSAQAL ADQGKALAQA KGCVACHSVN
GNPGVGPTWK DLYGSTQTMA DGTTAVADEA YLRAFIRDPK ARVVKGFAPI MPNFNLSEQE
LSALIAYIKA QGGPAPASAA KP
|
|---|
| |