| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_4669 |
|---|
| Symbol | |
|---|
| ID | 6284983 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010678 |
|---|
| Strand | + |
|---|
| Start bp | 999638 |
|---|
| End bp | 1003375 |
|---|
| Gene Length | 3738 bp |
|---|
| Protein Length | 1245 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642619146 |
|---|
| Product | nitrate reductase, alpha subunit |
|---|
| Protein accession | YP_001893181 |
|---|
| Protein GI | 187926836 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG5013] Nitrate reductase alpha subunit |
|---|
| TIGRFAM ID | [TIGR01580] respiratory nitrate reductase, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00847712 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCACT TTCTCGATCG CCTGAAGTTC CTCACCCACG TCCGGTCGAC CTTTGCCGAC
GGGCACGGCG CCGTGGTCAA TGAAGACCGC CGCTGGGAAG ACGGTTACCG CAGCCGCTGG
CAGCACGACA AGATCGTGCG CTCGACCCAC GGCGTGAACT GCACCGGTTC CTGCTCGTGG
AAGGTCTACG TCAAGAACGG CCTCATCACG TGGGAAACGC AGCAGACCGA CTACCCGCGC
ACCCGCCCGG ACCTGCCCAA CCACGAGCCG CGCGGCTGCC CGCGCGGCGC ATCGTATAGC
TGGTACGTCT ATTCCGCCCA GCGCGTGAAG ACGCCGCTGA TTCGCGGCCG GTTGATGGCG
ATGTGGCGCG AAGCACGCAA GACCATGGAC CCGGTTGCCG CCTGGGAATC CATCAGCCAG
GATCCCGAGA AGGCGCGGCG CTACAAGAGC GTGCGCGGCC AGGGCGGCTT CGTGCGCGCC
GACTGGGACA CCGCCACCGA GATCATCGCC GCCGCCAATG CGTACACCAT CAAGCGCTAC
GGCCCCGACC GCGTCGTCGG CTTCTCGCCC ATCCCTGCCA TGTCGATGGT GAGCTACGCG
GCCGGCGCGC GCTACCTGAG CCTGATCGGC GGCGTGTGCC TGTCGTTCTA TGACTGGTAT
TGCGACCTGC CGCCCGCCAG CCCGCAGGTC TGGGGCGAGC AGACCGACGT GCCGGAATCG
GCCGACTGGT ACAACTCCAC CTACCTGATG GTGTGGGGCT CCAACGTGCC GCAGACGCGC
ACGCCGGACG CGCACTTCTA CACCGAGGTC CGCTACAAGG GCACCAAGAC GGTGGCGATC
TCGTCCGACT ACGGCGAGAT GGTCAAGTTT GGCGACATCT GGCTCGCCCC CAAGCAGGGC
ACCGACGCCG CGCTGGCCAT GGCGATGGGC CACGTGGTGC TCAAGGAATT CCACACCACG
GGCAAGTCTG CCTACTTCCG TAGCTACGTC AAGCAGTACA CCGACATGCC GATGCTGGTG
CTGCTGCGGG CAACCGAAGA CGGCAGCTAC GCGGCCGACC ACTTCCTGCG CGCCTCGCAC
CTGGCGGGCA ACCACGGCGA GGCCAACAAC CCCGACTGGA AGACGCTGCT GATCGACGCA
CCCACGGGCC GGCTGGTGGT CCCCAACGGC GCCATCGGCC TGCGCTGGAA CGAAGCCCAG
CACGACGGTG GCGCCAAGGT TGGCCGCTGG AACCTCGAAC TGAAGGATTC CGCTGACGGC
TCGGAGATCG ACCCGCTGCT CTCGCTGGTC GCCACGCATG ACGACGTGGT GGACGTCAGC
TTCCCGTACT TTGGCGGGGA GCACGAGGCG ATGTTGAAAC GCCGCGTGCC CGTCAAGCGC
GTCACGCTGG CCGATGGCAC CACGGCGTGC GTTGCCACCG TGTACGACCT GCAATTGGCC
AACTACGGTG TCGACCAGGG CCTGGGTGGA CCCAACGTGG CCGCCAGCTT CGACGACGAC
GTGCCCTACA CCCCGGCCTG GCAGGAGAAG CACACAGGCG TGCCGCGCAA GCAGGTGATC
CAGGTGGCGC GCGAGTTTGC CGACAATGCC GATCGCACAC ACGGCAAGAG CATGGTCATC
GTCGGTGCGG CGCTGAACCA CTGGTATCAC AACGACATGA TCTACCGCGG CATCATCAAC
CTGCTGATGA TGTGCGGCTG CATCGGCCAG AGCGGCGGCG GCTGGGCGCA CTACGTGGGC
CAGGAGAAGC TGCGCCCGCA GTTCGGCTGG GCACCGCTGG CCTTCGGGCT GGACTGGTCG
CGCCCGCCGC GCCAGATGAA CGGCACCTCG TTCTTCTACA GCCACACTAG CCAGTGGCGC
CACGAGAAGC TGTCGTTGGA CGAGATCCTC TGCCCCACGG CGGACCGGGC ACGCTATGCC
GGCCAGTCAC TGCTGGACCT GAACACCAAG AGCGAGCGCA TGGGCTGGCT GCCCTCCGCG
CCGCAGCTCA ATGCCAATCC GTTGGATGTA ACGGACGCGG CAAAGGCCGC GGGCCAGGAC
CCTGTCGCCT ACACCGTCGA TCAACTCAAG CGCGGCAAGC TGCGCTTCGC CTGCGAAGAT
CCGGACCACC CGGACAACTT CCCGCGCAAC ATGTTCGTCT GGCGCTCGAA CATTCTCGGC
AGTTCAGGCA AGGGGCACGA GTACTTCCTC AAATATCTGC TCGGCACGCA GAACGCGCTG
TTCAGCGATG AAGCGGCCGC CATCAAGCCG TCGGAAGTGG AGGTGCGCGA GGCCGCCGAA
GGCAAGCTCG ACCTGCTGAC GGTGCTCGAC TTCCGCATGA GCACGACCTG CCTGTACGGC
GACATCGTGC TGCCCACGGC CACCTGGTAC GAGAAGGACG ACCTGAACAC GTCCGACATG
CACCCGTTCA TCCATCCGCT GTCGGAAGCG GTGCACCCGC TGTGGGAATC CAAGACGGAT
TGGGAAATCT ACAAAACCAT CGCCAAGAAG TTCACGGAAA TTGCCGGCCC GTTGCTCGGC
ACGCGCCACG ACCTGGTGTG CACGCCGCTG ATGCACGACA CCCCGGGCGA ACTGGGCCAG
CCGTTTGCAC CGAAGGATTG GAAATACGGC GAGTGCGATC TCATCCCGGG CAAGACCGCA
CCGGCGATGA CCGTGGTCGA GCGCAACTAC GCCGACATCT ATCGCAAGTT CACGTCGGTC
GGCCCGCTGC TCGACAAGCT GGGCAATGGC GGCAAGGGCA TCAACTGGAA CACCGAACAC
GAGGTGCACG AGTTGGCCGG CCTGACCCAC AAGGTCACGG CGCCGGGCGT GAGCCAGGGC
CGCCCTCGCC TGGAAACCGC TACGGACGCT GCAGAGATGA TCCTCACCTT TGCGCCGGAA
ACCAACGGCC ACGTGGCCGT CAAGGCGTGG GAGGCACTGT CCAGGATTAC CGGGCGCGAC
CATACGCACC TGGCCGTCGG GCGCGAGCAC GACAAGATCC GCTTCCGCGA CGTGCAGGCG
CAGCCGCGCA AGATCATCTC GGCGCCGACA TGGTCGGGGC TGGAATCGGA AGAGGTCAGC
TACAACGCCG GCTACACCAA CGTGCACGAG CTGATTCCAT GGCGCACCCT CACCGGCCGC
CAGCAGTTCT ACCAGGATCA CCGCTGGATG ATCGACTTTG GCGAAGGCGC GTGCCTGTAC
AAGCCGCCCA TCGACACCAA GACCGTGCAG CCGATGCTCG GCAAGCACAG CAACGGCCAT
CCGGAACTGG TGCTGAACTG GATCACGCCG CACCAGAAGT GGGGCATCCA CTCCACGTAT
TCCGACAACC TGCGCATGCT CACGCTCTCG CGCGGCGGCC CGCACGTGTG GATATCGGAG
GCCGAAGCCA AGGCTGCCGG CCTGCGCGAC AACGACTGGG TGGAAGTCTT CAACGTCAAC
GGCACGCTCA CGGCGCGGCT GGTGGTGAGC CAGCGCGTGC CGCGCGGCAT GTGCCTGATG
TACCACGCAC AGGAAAAGAT CGTGAACGTG CCGGGCGCCG AAACCAGCGG CATGCGCGGC
GGCATCCACA ACTCCGTCAC GCGCACCGTG ACCAAGCCCA CGCACATGAT CGGTGGCTAC
GCGCAACAGG CCTACGGCTT CAACTACTAC GGCACGGTCG GCAGCAACCG CGATGAATAC
GTGATCGTGC GCAAGATGCA GCGCGTCGAT TGGATGGAAG AACAACTGGC CGAGAGCCAT
TCGGGAGTCT CGCAATGA
|
|---|
| Protein sequence | MSHFLDRLKF LTHVRSTFAD GHGAVVNEDR RWEDGYRSRW QHDKIVRSTH GVNCTGSCSW
KVYVKNGLIT WETQQTDYPR TRPDLPNHEP RGCPRGASYS WYVYSAQRVK TPLIRGRLMA
MWREARKTMD PVAAWESISQ DPEKARRYKS VRGQGGFVRA DWDTATEIIA AANAYTIKRY
GPDRVVGFSP IPAMSMVSYA AGARYLSLIG GVCLSFYDWY CDLPPASPQV WGEQTDVPES
ADWYNSTYLM VWGSNVPQTR TPDAHFYTEV RYKGTKTVAI SSDYGEMVKF GDIWLAPKQG
TDAALAMAMG HVVLKEFHTT GKSAYFRSYV KQYTDMPMLV LLRATEDGSY AADHFLRASH
LAGNHGEANN PDWKTLLIDA PTGRLVVPNG AIGLRWNEAQ HDGGAKVGRW NLELKDSADG
SEIDPLLSLV ATHDDVVDVS FPYFGGEHEA MLKRRVPVKR VTLADGTTAC VATVYDLQLA
NYGVDQGLGG PNVAASFDDD VPYTPAWQEK HTGVPRKQVI QVAREFADNA DRTHGKSMVI
VGAALNHWYH NDMIYRGIIN LLMMCGCIGQ SGGGWAHYVG QEKLRPQFGW APLAFGLDWS
RPPRQMNGTS FFYSHTSQWR HEKLSLDEIL CPTADRARYA GQSLLDLNTK SERMGWLPSA
PQLNANPLDV TDAAKAAGQD PVAYTVDQLK RGKLRFACED PDHPDNFPRN MFVWRSNILG
SSGKGHEYFL KYLLGTQNAL FSDEAAAIKP SEVEVREAAE GKLDLLTVLD FRMSTTCLYG
DIVLPTATWY EKDDLNTSDM HPFIHPLSEA VHPLWESKTD WEIYKTIAKK FTEIAGPLLG
TRHDLVCTPL MHDTPGELGQ PFAPKDWKYG ECDLIPGKTA PAMTVVERNY ADIYRKFTSV
GPLLDKLGNG GKGINWNTEH EVHELAGLTH KVTAPGVSQG RPRLETATDA AEMILTFAPE
TNGHVAVKAW EALSRITGRD HTHLAVGREH DKIRFRDVQA QPRKIISAPT WSGLESEEVS
YNAGYTNVHE LIPWRTLTGR QQFYQDHRWM IDFGEGACLY KPPIDTKTVQ PMLGKHSNGH
PELVLNWITP HQKWGIHSTY SDNLRMLTLS RGGPHVWISE AEAKAAGLRD NDWVEVFNVN
GTLTARLVVS QRVPRGMCLM YHAQEKIVNV PGAETSGMRG GIHNSVTRTV TKPTHMIGGY
AQQAYGFNYY GTVGSNRDEY VIVRKMQRVD WMEEQLAESH SGVSQ
|
|---|
| |