| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_4612 |
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| Symbol | |
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| ID | 6285663 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010678 |
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| Strand | + |
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| Start bp | 938591 |
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| End bp | 940423 |
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| Gene Length | 1833 bp |
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| Protein Length | 610 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 642619089 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001893124 |
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| Protein GI | 187926779 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTCCCC AAACCTCTCT TCTCGGACTG CCTCGCCAGG GTAGCGCCCT ATCCGTACCG
CCTCCGCCCA TGTCCATTGC GGACTGCATG GAGAACGGGC TTCTGCACAC CGTATTTCAG
CCCATCGCAA ACCTGCCTTC CGGCGAGTTG CTCGGCTATG AGGCACTGAT TCGCGGACCT
GCCGGTTCCC CGCTCGAGCG TCCGCAGGCG CTCTTCGAAC AGGCGCAGCG CGAGCACTGC
GTCATCCAGC TCGAGCGATT CGCGGCACGG TTGAGCATCG AAACCTTCGG GCAGCTGAAG
CTGCCGGGCA AGCTGTTTCT GAACCTGAGC GCGGATGCCA TCCGCGAAAT CGACCACTGC
GAAGACGATG TACGCGCCTT CATGAGTCGC CAGCAATTTG CCTTCTCTAG AATCGTCATC
GAACTCACCG AGCAAGCGAG CCCAATGCCC CTGGACTCGC TTGAAGCGTC GCTGCGGCGT
ATTCGAGAAG CCGGCGCCCA GCTTGCGCTG GATGACTACG GAACGGGAAA CGCCAACCTT
AGCCTGTGGA TTGCCCTGCA ACCCGACTAC GTCAAGATTG ACCGGTCCAT TGTCGATGGG
GCCGCGCGTT CTGCCTTCCG TCTTGAAGCG CTGCGCTACC TGAAGGGACT CGCGACCGCG
AGCCATGCCC TGTTGATTGC CGAGGGCCTC GAGAATCTCG ACGACTTACG GGTCTGCCGC
GATATCGGCA TCGAATGTGC CCAAGGCTTC GTCTTCGGCA GGCCGAGTAC CGCGCCGGGG
CACAGCGTGC AGGGGCCTGC GCTGGAAGCC ATCAAGGCCA ATGTGATTGC CGTGTTTCCG
GAAACGGTCA AAGTCCCGCA ACGTGCTTTT TCAGCAAGCC GGTTGTTGAT CAAGGCGCCG
AGCGTGTCGC CCTCCGCATT GAATAACGAC GTGCTGGACG TGTTTACCAG GCACCCCGCG
CTCCACGCCG TTGCCGTTGT CGAGCAAGGG CGAACCGTCG GCCTCATCAA CAGGCATACC
TTCGTGGATG CGTATGCGCA CCCGTATCAC CGGGAGCTCT ATGGCAGGAA GAGTTGCATG
GAGTTCGCGA ACACCTCTCC CGTGGTCGTG GAAAGAAGCG CGACGATGGA GGCGCTGGCA
AATGTGCTGA CCGCGCAGGA CCAGCGGTAT CTCACCCAAG GGTTGGTCAT CGTTGAGCAG
GGCCAGTATG TTGGCCTGGC GACGGGCGAA GCATTGGTCC GTGCCGTTAC GGAAATACGG
ATTGAAGCGG CACGCTACGC GAATCCGCTC ACGTTCCTGC CGGGCAATAT TCCCATCGAT
GCGCATATCA AGCGGCTGCT GGCAAGCCAA GTGCCGTTTC ATGCGTGCTA TTGCGACCTG
AACAGTTTCA AGCCGTTCAA TGATCAGTAC GGCTATTGGC ATGGCGATGA AATGCTGAAA
CTGGCCGCAG CAACCCTGAC ACAGGCGTGC GCGCCTCAGA AGGACTTTCT GGGGCACGTG
GGCGGGGACG ACTTCCTGAT TCTTTTCCAA AGCGACGATT GGGAGCGCCG GATCCGCGAG
GCGATGACGC AATTCGATGC CAGGGCTGTC CAGCTATACA CACCCGCGGA TATCGCGGCG
GGCGGCATCC GGAGCGAGGA CCGCCACGGC GATCTGCGTT TCTACGGCTT CGTATCGATT
GCGGTCGGCG TGGTCCCCAT CCAGGCGGGC GCCGCCGTCG ATGGCGACAC CATCGCAACC
TTGGCCGCGG CTGCAAAGCG CGAGGCCAAG CGATCCGCCG AGAACTTCTT CATCTGGCGC
GACGACGCGC TGGACCCTGC ACGCAATGCC TGA
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| Protein sequence | MRPQTSLLGL PRQGSALSVP PPPMSIADCM ENGLLHTVFQ PIANLPSGEL LGYEALIRGP
AGSPLERPQA LFEQAQREHC VIQLERFAAR LSIETFGQLK LPGKLFLNLS ADAIREIDHC
EDDVRAFMSR QQFAFSRIVI ELTEQASPMP LDSLEASLRR IREAGAQLAL DDYGTGNANL
SLWIALQPDY VKIDRSIVDG AARSAFRLEA LRYLKGLATA SHALLIAEGL ENLDDLRVCR
DIGIECAQGF VFGRPSTAPG HSVQGPALEA IKANVIAVFP ETVKVPQRAF SASRLLIKAP
SVSPSALNND VLDVFTRHPA LHAVAVVEQG RTVGLINRHT FVDAYAHPYH RELYGRKSCM
EFANTSPVVV ERSATMEALA NVLTAQDQRY LTQGLVIVEQ GQYVGLATGE ALVRAVTEIR
IEAARYANPL TFLPGNIPID AHIKRLLASQ VPFHACYCDL NSFKPFNDQY GYWHGDEMLK
LAAATLTQAC APQKDFLGHV GGDDFLILFQ SDDWERRIRE AMTQFDARAV QLYTPADIAA
GGIRSEDRHG DLRFYGFVSI AVGVVPIQAG AAVDGDTIAT LAAAAKREAK RSAENFFIWR
DDALDPARNA
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