Gene Rpic_4539 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_4539 
Symbol 
ID6284955 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010678 
Strand
Start bp865423 
End bp866580 
Gene Length1158 bp 
Protein Length385 aa 
Translation table11 
GC content65% 
IMG OID642619020 
Productacyl-CoA dehydrogenase domain protein 
Protein accessionYP_001893056 
Protein GI187926711 
COG category[I] Lipid transport and metabolism 
COG ID[COG1960] Acyl-CoA dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.452852 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.739278 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGCTCG ACGACGAATC GTTCGGTCTG CTGCAGCAAT CGGTGCAGCG CTTCATCCAG 
GACCGGCTCA TGCCGGCCGA AAACATCCTC GAAGACGAAG ACGACGTGCC CGCCGACATC
GTCGCCGACA TGAAGGACAT GGGCCTCTTC GGCCTGTCGA TCCCGGAGGA GCATGGCGGC
ATTGGCCTGT CGATGGCCCA GGAATGCGAG GTGGTGTACG ACCTCGGCCA CACGGCGTTT
GCGTTCCGCT CGGTGTTCGG CACCAACGTT GGCATCGGCT CGCAGGGCAT CCTCATGGAT
GGCACGGACG CCCAGAAGGC GGATTATCTG CCGCGCATCG CCAGCGGCGA GCTGATCATC
TCGTTTGCAC TCACGGAGCC GAATGCGGGT TCGGATGCGG CATCGCTGCA GACGCGGGCG
ACGCTGGATG GTGATCACTA CGTCATCAAT GGCACCAAGC GCTACATCAC CAACGCGCCG
CGCGCCGGTG CGTTCACACT GATGGCGCGC ACGGGCGGCG AGGGCGCGAG CGGTATCTCC
GCGTTCATCG TGCCGGCCGA CACGCCGGGC ATCACGCTCG GCAAGCCCGA CAAGAAGATG
GGACAGCGCG GCACCAAGAC GTGCGATGTG ATGCTCGACA ACGTGCGCGT GCCGGCGGCG
AATATCATCG GCGGCGTGGC AGGGCAGGGT TTCAAGACGG CGATGAAGGT GCTGGACCGG
GGGCGCCTGC ATATCTCCGC GCTGGCCTGC GGGATGGCGC ATCGGCTCAT CACGGACGCC
GTGGCGTATG CCAAGGAGCG CAAGCAGTTC GGCCAGCCGA TCGCCGATTT CCAGCTGATC
CAGGCCATGC TGGCCGATAG CCAGGCCGAG CTGTACGCCG GCATGTCGAT GGTGCGCGAT
TGTGCGCGCC GCTACGACGC CAAGCCCGTC GGCAAGCAGG ACCATGAAGT CAGCATGCTC
GCCTCGTGCA CCAAGATGTT CTGTACCGAG ATGGTGGGCC GGGTGGCGGA TCGCGCGGTG
CAGATTCATG GCGGCGCGGG CTACATCGCC GAATACAAGG CGGAGCGCTT CTATCGCGAC
GTGCGCCTGC TGCGCCTGTA CGAAGGCACG ACGCAGATCC AGCAACTCAT CATCGCCAAG
AACCTGTTGC GCGATTGA
 
Protein sequence
MALDDESFGL LQQSVQRFIQ DRLMPAENIL EDEDDVPADI VADMKDMGLF GLSIPEEHGG 
IGLSMAQECE VVYDLGHTAF AFRSVFGTNV GIGSQGILMD GTDAQKADYL PRIASGELII
SFALTEPNAG SDAASLQTRA TLDGDHYVIN GTKRYITNAP RAGAFTLMAR TGGEGASGIS
AFIVPADTPG ITLGKPDKKM GQRGTKTCDV MLDNVRVPAA NIIGGVAGQG FKTAMKVLDR
GRLHISALAC GMAHRLITDA VAYAKERKQF GQPIADFQLI QAMLADSQAE LYAGMSMVRD
CARRYDAKPV GKQDHEVSML ASCTKMFCTE MVGRVADRAV QIHGGAGYIA EYKAERFYRD
VRLLRLYEGT TQIQQLIIAK NLLRD