Gene Rpic_4305 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_4305 
Symbol 
ID6285847 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010678 
Strand
Start bp602459 
End bp604345 
Gene Length1887 bp 
Protein Length628 aa 
Translation table11 
GC content65% 
IMG OID642618787 
Product4-hydroxyphenylpyruvate dioxygenase 
Protein accessionYP_001892828 
Protein GI187926483 
COG category[E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism
[R] General function prediction only 
COG ID[COG1082] Sugar phosphate isomerases/epimerases
[COG3185] 4-hydroxyphenylpyruvate dioxygenase and related hemolysins 
TIGRFAM ID[TIGR01263] 4-hydroxyphenylpyruvate dioxygenase 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.92924 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATTCGC TCCGCGCAGC GCGCTATCCC AAATGCATCG CCACCGTGTG CCTGTCCGGC 
ACGCTGCCTG AAAAGCTGGA GGCGGCGGCC GCTGCCGGTT TTGATGGCAT CGAGATCTTC
GAAAACGATC TGCTGAACTT CGACGGCTCG CCGGACCGCG TGCGCCAGAT GGCGGCAGAC
CTTGGGCTCG CGATCATGCT GTACCAGCCG TTCCGTGACT TCGAAGCCAT GCCGCGTGAG
TTGTTCGCCC GAAACCTGGC GCGCGCCGAG CGCAAGTTCG ACGTGATGGC CGAACTGGGC
GTCGAGACGG TGCTGGTATG CAGCAACGTG CAGGACATCG CCATCGACGA CCCGGCGCGC
GCAGCAGACG ATCTGCGCCA GATGGCGGAA GCTGCGGCCG GGCGTGGGCT GCGTGTGGGC
TACGAGGCGC TGGCATGGGG GCGGCACACG CGAACCTGGC GGCAAGCGTG GCAAATCGTG
CAGCAGGCTG ACCACCCGGC GCTCGGGCTG ATTCTCGACA GCTTCCATAC GCTGTCGCTG
GGCGACACGT TGGATGGCCT CCACAACGTG CCGGCGGACA AGCTCTTCTT CGTGCAGTTT
GCCGATGCGC CAAGGCTGTC GATGGACGTA CTGTCCTGGA GCCGGCATCA CCGTAACTTC
CCGGGGCAGG GCGACCTGCC GGTGACGGAC TTTGCGCGCG ACTTGCTTGC TGCGGGCTAT
ACCGGGCCCT TGTCGCTCGA AGTCTTCAAT GACGATTTCC GCTCCGCGCC CGCGCGGCTC
ACGGCGCTGG ATGGCATGCG TTCACTACTC TGGCTGGAGT CCGAAGCGGG CGGGGCAGAA
CTGCCGGCCG CAGCTCAATT TGAAGGCGTG GACTTCCTGG AGTTTGCCGT GGATGCCGCG
GCAGGGCGGG AGCTTGAAAC GCGCCTGCGT GCGCTGGGTT TTGCCTTTGC CGGGCACCAT
CGCTCCAAGG CCGTTGACCT GTATCGGCAA GGCCGCGTCA ACGTGATCCT GAACATGGAG
CAGGACAGCG CGGCGTCGGA GCATTTCGAG CTGCACGGGC CGTCTGTCTG CGCGATCGGC
CTGAAGGTGG ACGACGCCGA GCGCGCCATG GCACGCGCAC GTGTGCTGTG CGCCCAGGAG
TGGCGCGGGC CGGTGGGGCC TGCCGAACGC AGCATTCCCG CGCTGCGGGC CCCCGATGGC
ACGCTGCTCT ATCTGATCGA CGACCGCCAA GCCGATCGCA GCATCTACGA AAGCGATTTC
GTTCTCCATC CTGGCATGCA GGACGATGCA GCGGGATTGG CATCAATCGA CCACGTCGCG
CACGCGCTGC CCGCACATCG GCTCGACAGC TTCGTGCTGT TCTACCGGGC CATCTTCGGC
ATGGAAGCCG AACCCGAACA GGAGATTGCC GACCCGTACG GCCTAGTCAA AAGCCGTGCG
ATGGTGAGCC CCGACCGCAA CGTGCGGATT CCGCTCAACG TATCGGAGAG CGGGCGCACC
GCCACCGGCC GGTTCATTGC CGCCTACGCG GGCTCGGGCG TGCATCACAT TGCCTTCCGC
ACCGAGCGGC TGTTCGAAAC GATTGAGGCC ATCGACCGAG GCGCCGCCCA CCTGCAGCAC
GTGCCAGAGA ACTACTACGA CGACGTTGCC GCCCGCCTGG GGCTGGACGA TGCGCTGCTC
ACCCGCCTGC ACGACGATGG TCTGCTCTAC GACCGCGACC CGCACGGCGA TTTTCTGCAC
ACCTACACCG AGCCCTTTCG CGAGCGCTTC TTCTTCGAGC TTGTCCAGCG CAACGGCTAC
CTGGGCTACG GCGCGGCAAA CGCCGCTGTG CGCATGGCCG TACAGGCGCA ACTGAGCCGC
ACCACCACCA ATACGGCTGA TCACTGA
 
Protein sequence
MNSLRAARYP KCIATVCLSG TLPEKLEAAA AAGFDGIEIF ENDLLNFDGS PDRVRQMAAD 
LGLAIMLYQP FRDFEAMPRE LFARNLARAE RKFDVMAELG VETVLVCSNV QDIAIDDPAR
AADDLRQMAE AAAGRGLRVG YEALAWGRHT RTWRQAWQIV QQADHPALGL ILDSFHTLSL
GDTLDGLHNV PADKLFFVQF ADAPRLSMDV LSWSRHHRNF PGQGDLPVTD FARDLLAAGY
TGPLSLEVFN DDFRSAPARL TALDGMRSLL WLESEAGGAE LPAAAQFEGV DFLEFAVDAA
AGRELETRLR ALGFAFAGHH RSKAVDLYRQ GRVNVILNME QDSAASEHFE LHGPSVCAIG
LKVDDAERAM ARARVLCAQE WRGPVGPAER SIPALRAPDG TLLYLIDDRQ ADRSIYESDF
VLHPGMQDDA AGLASIDHVA HALPAHRLDS FVLFYRAIFG MEAEPEQEIA DPYGLVKSRA
MVSPDRNVRI PLNVSESGRT ATGRFIAAYA GSGVHHIAFR TERLFETIEA IDRGAAHLQH
VPENYYDDVA ARLGLDDALL TRLHDDGLLY DRDPHGDFLH TYTEPFRERF FFELVQRNGY
LGYGAANAAV RMAVQAQLSR TTTNTADH