Gene Rpic_4274 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_4274 
Symbol 
ID6285772 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010678 
Strand
Start bp570275 
End bp571798 
Gene Length1524 bp 
Protein Length507 aa 
Translation table11 
GC content64% 
IMG OID642618757 
Productmethylmalonate-semialdehyde dehydrogenase 
Protein accessionYP_001892798 
Protein GI187926453 
COG category[C] Energy production and conversion 
COG ID[COG1012] NAD-dependent aldehyde dehydrogenases 
TIGRFAM ID[TIGR01722] methylmalonic acid semialdehyde dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.463031 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value0.914985 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCGAC CGATTGATCC CGCCGTGACC GAATCCGTTG TCAGCCATTA CATCGGCGGG 
CAGCGCCATG CCGGCAGCGG CACACGCAGC GCCGATGTCT TCAACCCCGC TACGGGCGCG
GTGAGCGCGC AGGTGCTGCT GGGCGGCAAA TCCGAAGTGG ACGCCGCCGT AGCCGCCGCG
CATGCGGCTG CCCCGGACTG GGCCGAGACT TCGCCGCTCA AGCGCTCGCG CGTTTTGTTC
AAGTTCAAGG AGCTGCTCGA CCAGAACCAC GATGCTCTGG CCGCCGCCAT TACGCGTGAG
CACGGCAAGG TGTTCTCCGA TGCCAAAGGC GAAGTGACGC GCGGCATTGA AGTCGTCGAA
TTCGCCTGCG GCATTCCGAA CCTGCTCAAG ACGGAGTTCA CGGACAACAT CGGCGGCGGC
ATCGACAACT GGAACCTGCG CCAGCCGCTG GGCGTGGTGG CCGGCATTAC GCCGTTCAAC
TTCCCGTTCA TGGTGCCGAT GTGGATGGCG CCGGTTGCGC TGGCGTGCGG CAATACGTTC
ATCCTCAAGC CCAGCGAACG TGACCCGACC CCCAGCCTGA TGATTGCCGA CCTGCTCAAG
CAGGCGGGCC TTCCCGATGG TGTGTTCAAC GTGGTACAGG GTGGCAAGGA TGCCGTTGAT
GCGCTGCTCG AGCATCCGGA TGTGCAGGCC ATTTCGTTCG TCGGCAGCAC GCCCATCGCC
GAATACATCT ACGCCGAAGG CACCAAGCGC GGCAAGCGCG TGCAAGCCCT GGGCGGCGCA
AAGAATCACC TCGTCGTCAT GCCGGATGCA GACCTCGACC AAGCGGTGGA TGCCTTGATC
GGTGCAGGCT ACGGTTCGGC CGGTGAGCGC TGCATGGCGA TCTCCGTGGC TGTGGCAGTG
GGCGACGTGG CTGACAAGCT CGTCCCGCGC CTTGCCGAGC GCGCCCGCGC GCTCAAGATC
GGCAACGGCA TGCAGGCCGA CAGCGAAATG GGTCCACTTG TGACCGCCGC CCACAAGGCC
AAGGTGGAAG GCTATATCGC CAAGGGCGTG GAAGAGGGCG CCGAGCTGGT CGTGGACGGC
CGCGGCCACA CGGTCGACGG CCATGCCGAA GGCTTCTTCA CGGGCGGCAC GCTGTTCGAC
CACGTCAAGC CCGGGATGAC GATCTACAAG GAAGAGATCT TCGGCCCCGT GCTTTCGGTG
GTGCGCGTGC ATGACCTTGC CGAGGCGGTG GATCTGATCA ATGCGCATGA GTTCGGCAAC
GGCGTGTCGT GCTACACGAG CGATGGCGGC GTGGCGCGCG CATTTGCGCG GCAGATCCAG
GTGGGCATGG TCGGTATCAA TGTGCCGATT CCGGTGCCGA TGGCGTGGCA TAGCTTCGGC
GGCTGGAAGC GCTCGCTGTT CGGCGACCAC CACGCCTATG GCGAAGAAGG CGTGCGTTTC
TACACGCGTT ACAAGAGCGT GATGCAACGC TGGCCGGATT CGATTGCCAA GGGCGCCGAG
TTCGTGATGC CGACAGCCAA GTAA
 
Protein sequence
MNRPIDPAVT ESVVSHYIGG QRHAGSGTRS ADVFNPATGA VSAQVLLGGK SEVDAAVAAA 
HAAAPDWAET SPLKRSRVLF KFKELLDQNH DALAAAITRE HGKVFSDAKG EVTRGIEVVE
FACGIPNLLK TEFTDNIGGG IDNWNLRQPL GVVAGITPFN FPFMVPMWMA PVALACGNTF
ILKPSERDPT PSLMIADLLK QAGLPDGVFN VVQGGKDAVD ALLEHPDVQA ISFVGSTPIA
EYIYAEGTKR GKRVQALGGA KNHLVVMPDA DLDQAVDALI GAGYGSAGER CMAISVAVAV
GDVADKLVPR LAERARALKI GNGMQADSEM GPLVTAAHKA KVEGYIAKGV EEGAELVVDG
RGHTVDGHAE GFFTGGTLFD HVKPGMTIYK EEIFGPVLSV VRVHDLAEAV DLINAHEFGN
GVSCYTSDGG VARAFARQIQ VGMVGINVPI PVPMAWHSFG GWKRSLFGDH HAYGEEGVRF
YTRYKSVMQR WPDSIAKGAE FVMPTAK