Gene Rpic_4154 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_4154 
Symbol 
ID6285568 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010678 
Strand
Start bp421438 
End bp423018 
Gene Length1581 bp 
Protein Length526 aa 
Translation table11 
GC content67% 
IMG OID642618639 
Productdrug resistance transporter, EmrB/QacA subfamily 
Protein accessionYP_001892680 
Protein GI187926335 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.326396 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCTCCC GCCCGAGCAT TGAACCGCCC AAGCCAGACA CGCCTACTGC GCCCATCGCG 
TCGGCATCCA GCCCGCTGGA TGCGCTACCC GTGCCTGAAA TTCCGGTGAT GGCAGTGATG
GGCGGGCTGA TGCTCGCCAT CTTGCTGGGC GCGCTGGAGC AAACCATCGT TGCGGTGGCC
TTGCCCGTGA TCGCGGGCGA ATTCAACGGC TTTGCGCTGA TGGCCTGGTT GGTGTCGGCG
TATCTGGTGG CGTCCACGGT GGTGACGCCC ATCTACGGCA AATTGAGTGA CCTCTACGGC
CGCCGCGCCA TGCTGACGAC GGCCATCGTG CTGTTCGTGC TGGCGTCGGT GGCGTGTGCG
GTGGCGACCA GCATGCCGAT GCTGTTGTTT GCACGCGTGC TGCAGGGGCT GGGCGGCGGC
GGTCTGATCT CGGTATCGCA GGCCACGATC GCCGATGTGG TGCCGCTGCG CGAGCGTGGC
CGCTACCAGG GCTACGTGAG CGGCATGTGG GCCATGGCCA GCCTCGCCGG ACCGGTGATC
GGTGGCTATC TGACGCATTA CCTCTCGTGG CGCTGGATTT TCTGGATCAA CCTGCCCCTG
GGCATCGTCG CGCTGTTCGT CGTGCGCCGC ACGCTTCGGC ATCTGCCGGT GGCGCATCAG
CGCCGCCCCA TCGACGTGCC CGGCGTGGTG CTGTTTGCCG GAGGCCTGAC AGCGCTGTTG
CTGATGATCA CCCGCGTGGG GCAGGGCACG CCGCTCACGC AGCCCGAAAA CCTTGGCCTG
CTGGCGGCGG CGGTGGTGCT GCTGGGCGCG TTTGTCTGGC AAGAGAACCG CGCCGTCGAG
CCGATCATTC CGCTGTCGAT GTTCCGGGTC CGTACCGTCA CGATCTGCTG CCTGGCGCTG
TTCCTGTGCT TCTTCCAGCT GATCGCCACG TCGGTGCTGA TGCCCCTGCG CTTCCAGATG
GTGGCGGGTG CCAGCCCCGA TGCCGCCGCG CTGCGCCTCG TGCCGCTCAC GCTGTCGATT
CCGCTTGGCG CCTTCATTGC CGGCAAATGG ATGACGCACA GCGGTCGCTA CAAGCCCCTG
ATGCTGGGTG GCGCATGCGT GGTGCCGTTT GCCGTGGCAT CGCTGGGTCT GCTGGACCCG
CACAGCGTGT TGGCGCTGAC CCTGGCGATG ATCGTGCTTG GCCTGTCGAT TGGCGTGCAG
TTCCCGACCG GCCTGGTGGC CACGCAAAAT GCGGTGTCGC CGCAGACGGT GGGTCTGGCC
ACGGCACTGA CCGCCTTCTC GCGCCTGCTG GGTGGCGCGG TGGGTGTGGC GGTGCTGACG
TCCGTGCTGA TTGCGCTGCT GCGTCAGGCT GCGCCCGAAG CGCAGGTAGC GGCCGGTGGC
GACGTGCTGA TGGACCTTTT CCATGCCGCG CTTGCCAGCA GCGGTGCCGA TGCCCAGGCC
CTGCAGCGCG CAGGCGAGAG CGCGTTCCGG CATCTGTTCT TCTTTGCCGC TGCGGTGTCG
GTTATTTCGC CGCTGTTGGT CATGCGGCTG GAAGAGAAGG CGCTGCGCGG CAAGGTGTCG
CTTGCCGAGG CTGTCGAGTA A
 
Protein sequence
MSSRPSIEPP KPDTPTAPIA SASSPLDALP VPEIPVMAVM GGLMLAILLG ALEQTIVAVA 
LPVIAGEFNG FALMAWLVSA YLVASTVVTP IYGKLSDLYG RRAMLTTAIV LFVLASVACA
VATSMPMLLF ARVLQGLGGG GLISVSQATI ADVVPLRERG RYQGYVSGMW AMASLAGPVI
GGYLTHYLSW RWIFWINLPL GIVALFVVRR TLRHLPVAHQ RRPIDVPGVV LFAGGLTALL
LMITRVGQGT PLTQPENLGL LAAAVVLLGA FVWQENRAVE PIIPLSMFRV RTVTICCLAL
FLCFFQLIAT SVLMPLRFQM VAGASPDAAA LRLVPLTLSI PLGAFIAGKW MTHSGRYKPL
MLGGACVVPF AVASLGLLDP HSVLALTLAM IVLGLSIGVQ FPTGLVATQN AVSPQTVGLA
TALTAFSRLL GGAVGVAVLT SVLIALLRQA APEAQVAAGG DVLMDLFHAA LASSGADAQA
LQRAGESAFR HLFFFAAAVS VISPLLVMRL EEKALRGKVS LAEAVE