| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_4057 |
|---|
| Symbol | |
|---|
| ID | 6285393 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12J |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010678 |
|---|
| Strand | - |
|---|
| Start bp | 325778 |
|---|
| End bp | 326818 |
|---|
| Gene Length | 1041 bp |
|---|
| Protein Length | 346 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642618546 |
|---|
| Product | ApbE family lipoprotein |
|---|
| Protein accession | YP_001892587 |
|---|
| Protein GI | 187926242 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1477] Membrane-associated lipoprotein involved in thiamine biosynthesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.807087 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATCCGC TGCCCCCTTC CAACCTGGGC CGCCGGCGCT GCCTGGCGGG GGTGCCCCTG
CTGGCAGTCG GCATGTTCGT ACGGCCGGCC CTGGCAGACC CCACTGTGGA GCGCGCATCC
ACTCAATTGC TGGGCACTCA AATCGACATC ATTGCGCAAG ACGCGAGACC GGGCGCCGCC
GGTGCGGCCA TGCGCGCTGC CTTTGTGGAG ATGGCGCGGC TCGAATGCTT GATGAGCCGC
TACCGGCCCG ACAGCCAGGT CAGCGCACTG GCACGCGCGG CGGGGCGGAA CCCCGTGCCG
GTGGCACCTG AAGTCATGTC GGTGTTCAAG CTTGCCCGAC AGGTCTCGGA GCAAAGCCGC
GGCGCCTTCG ATATCACCGT CGGCGCGTAC TCCGGCTGGA ATTTTGATCC GGAGCACAGC
CGCATTCCGA GCAGCAGCGA ACTGGCGCGT GAGCGCCGCT TCGTCAACTA TCGAGACGTC
GTTCTGGACG AGCGCCACGG CAGCGTCTAC TTGCGACGCC CGGGGATGAG GCTGGATCTT
GGCGGCATTG CCAAGCTGCC GATCCTGGAG GCAGGCATGC GCGTGCTACG GCAACACGGC
ATACGCGATG CCATGATCAA CGGTGGAGGC GATGTGGTGG CCAGCGGGAA GCTGCAAGGT
CACGAATGGC GCGTCGGACT GCGCGATCCG CTTGCGCCGG AGCGACTGCT GGGCGTGGTC
ACGCTCAGTG ACGGGGTTGT GGCGTCATCC GGAGACTACG AGCGTTACTT CATGCACAAC
GGTCAGCGCT TTCATCACGT TCTCGATCCG GAAACGGGTC TGCCTGCGCA TGGGCCCCAT
GGCGTAACCC TGGTCAGTCG CGACGTTGAC GACGTCAACG GCCTTGGCGC GGCAATCATG
GCAGCGGGCA CCGCCACCGG GCAGCGGATG CTTGCACCGA TGCTCGCACG CGTGGATGCC
CTGATCGTAG GTTCTGGAGT TCGGCCATGG ATGTCGGCCG GAATGGCAAC GCGCTTGCGG
CAGTTCTCTG CAAGCAGTTG A
|
|---|
| Protein sequence | MHPLPPSNLG RRRCLAGVPL LAVGMFVRPA LADPTVERAS TQLLGTQIDI IAQDARPGAA
GAAMRAAFVE MARLECLMSR YRPDSQVSAL ARAAGRNPVP VAPEVMSVFK LARQVSEQSR
GAFDITVGAY SGWNFDPEHS RIPSSSELAR ERRFVNYRDV VLDERHGSVY LRRPGMRLDL
GGIAKLPILE AGMRVLRQHG IRDAMINGGG DVVASGKLQG HEWRVGLRDP LAPERLLGVV
TLSDGVVASS GDYERYFMHN GQRFHHVLDP ETGLPAHGPH GVTLVSRDVD DVNGLGAAIM
AAGTATGQRM LAPMLARVDA LIVGSGVRPW MSAGMATRLR QFSASS
|
|---|
| |