Gene Rpic_3958 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_3958 
Symbol 
ID6285195 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010678 
Strand
Start bp216538 
End bp217164 
Gene Length627 bp 
Protein Length208 aa 
Translation table11 
GC content65% 
IMG OID642618449 
ProductNAD(P)H dehydrogenase (quinone) 
Protein accessionYP_001892490 
Protein GI187926145 
COG category[I] Lipid transport and metabolism 
COG ID[COG1182] Acyl carrier protein phosphodiesterase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.506419 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAACAC TGCTGCACGT GACCGTGAGC CCGCGCGACG ATCGCTCGCA CAGCCGGCGT 
GGCGCAAAGT GGGTGGTCGC ACAATTGGCA GAGGCCGTTG GTGGCCTGCG CGTCATCGAG
CGCGATCTGG CGGCCACGCC GTTGCCGCAT CCCGATGCCG GTTTTGTCGA GGCCAGCCTC
ACGCCCGATG CCGACCGCAC CGCAGCGCAC CGTGCAGCGC TTGCGCTGTC GGAAACGCTG
ATCGGCGAAC TGGGAGCAGC GGATGCCGTG TTGATTTCCA CGCCGGTGCA CAACTACACG
GTGCCTTCGG CGTTGAAGGC GTGGATCGAT CTGGTGGTGC GGCCCGAACG CACGTTCCGC
CGCACGCCCA CGGGCAAGGT GGGCATGCTG ACCGATCGCT CGGTGCTGGT GGTATCCGCT
TCAGGCGGCC ACTTTGACGG CGCCCACGCG CAGACCGATT TCCTGATGCC ATATCTGCGT
TATGTGTTTG CCACGGTGGG CATCCATCAG GTGGAAGGCA TCCGCTTGCA GAACACTGCG
CGCGGTGCTG ATTCCGCCAT GCAGGCCTTC GAAAGTTTCC GGCAGGAACT GGCTGCGCGG
ATGTTGCTCA TGCCGCTGGT GGCCTGA
 
Protein sequence
MTTLLHVTVS PRDDRSHSRR GAKWVVAQLA EAVGGLRVIE RDLAATPLPH PDAGFVEASL 
TPDADRTAAH RAALALSETL IGELGAADAV LISTPVHNYT VPSALKAWID LVVRPERTFR
RTPTGKVGML TDRSVLVVSA SGGHFDGAHA QTDFLMPYLR YVFATVGIHQ VEGIRLQNTA
RGADSAMQAF ESFRQELAAR MLLMPLVA