| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_3937 |
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| Symbol | |
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| ID | 6285136 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010678 |
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| Strand | - |
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| Start bp | 187897 |
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| End bp | 190203 |
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| Gene Length | 2307 bp |
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| Protein Length | 768 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642618428 |
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| Product | glycogen branching enzyme |
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| Protein accession | YP_001892469 |
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| Protein GI | 187926124 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0296] 1,4-alpha-glucan branching enzyme |
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| TIGRFAM ID | [TIGR01515] alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.353505 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACCGCGC TCGACTTTGC CACCCCAACC AAAACCGCTG CCGAACCCGA AGCACCGGTC
GTGCTGCCGC CCGGCCTCGA CCAGATGCAG GTCGATGCGC TGACGCATGG CCGCCTGGGT
GACCCGTTTG CAGTGCTGGG GCCGCATCGC CTCGACACTG AAGATGGCCC GCGCTGGGTC
GTGCGCGCTT TCTACCCGGG CGCGCGCCGT GTGCAGGCCA TCGACTCGCG CGGCCAGATC
ATCACGGAGA TGACGCCGGT GGGCCGGACG GGACTGTTCC ACGGACCCCT GCGCGCCGAT
GCACAGGATG TGTATGGCCA CCCGGAGCTG TATCGCCTGC GCGTCATCTG GCCTGCGGGC
ACCGGCCATG AAGCCGTGCA GGAAACCGAA GACCCATACG CCTTCGGGCT GCTGCTCGGC
GATCTGGACA TGCATCTGCT CAACGAGGGC ACGCATTGGG CGCTGGCAAG CTGCCTGGGC
GCGCAGGCGA TGCGCATCGA CGGCATCAGC GGCGTGCGCT TTGCGGTGTG GGCGCCGAAC
GCGCAGCGCG TGTCGGTGGT GGGCGAGTTC AACCAGTGGG ACGGCCGTCG CCACCCCATG
CGCCTGCGCC ATCAGGCCGG CGTGTGGGAA CTGTTTTTGC CGAGCGGCTT GGGCGTTGGC
CCCGGCGCGC GCTACAAGTT CGAACTGATC GGCGCCGACG GCCGGCTGAT GGTCAAGGCC
GACCCCGCCG CCCGCCAGAC CGAACCGCCG CCCGCCACCG CCTCCGTCGT GGCCGACCCG
GCGCCGCTGC GCTGGAACGA CGACGCGTGG ATGCAAACGC GCGCCGAACG CCAGAAGCCC
GACGCGCCCA TCAGCATCTA TGAAGTGCAT GCCGGCTCCT GGCTGCGCGA TCTGGAAGAC
GGCGGCCGCA ACCTGCAATG GGATGAGCTG GCCGACCGGC TGATCCCCTA CGTCACGGCG
CTCGGCTTCA CGCACATTGA ACTGCTGCCG GTGGCGGAAC ACCCGTTTGG CGGCAGTTGG
GGCTATCAGC CGCTGGGGCT GTTCGCACCG TCTGCGCGCT TTGGGGCGCC CGAGGCGTTT
GCGCGCTTTG TCGACCGCTG CCATCAGGCT GGCCTGGGCG TCATCGTCGA CTGGGTGCCC
GCGCACTTCC CGACCGACGC GCACGGGCTG GCGCAGTTTG ACGGCACCGC GCTGTATGAA
CACCAGGACC CGCGCGAAGG CTTCCATCAG GACTGGAACA CGCTCATCTA CAACTTCGGC
CGCAACGAAG TGCGCGGATT CCTCATCGCG AGCGGGCTGG AATGGCTGGA GCGGTTCCAC
ATTGACGGCC TGCGCGTGGA TGCCGTGGCG TCGATGCTGT ATCGCGACTA CTCGCGCCGC
GCCGGCGAAT GGGTCCCCAA CCGCTACGGC GGCCGCGAAA ACCTCGAGGC CGTGGCGTTC
ATCCAGAAGA TGAACACGGT CGTGCACGAA CGCTGCCCCG GCGCCATCAC CATCGCCGAA
GAGTCGACCG CCTGGCCGGG CGTGACCGCG CCCGTGGAAT TCAACGGCCT GGGCTTCGAC
TACAAGTGGA ACATGGGTTG GATGCACGAC ACGCTGCATT ACATGCAGCG CGACCCCGTG
TACCGGCAGC ACCATCACGA CGGCATGACG TTCGGGCTGG TGTACGCGTT CTCCGAACAC
TTCATCCTGC CGATCTCGCA CGACGAGGTG GTTCACGGCA AGGGCTCGCT GCTGGGCAAG
ATGCCCGGCG ATGAGTGGCA ACGGCTGGCG AACCTGCGTG CCTACCTCGC ATTCATGTGG
ACGCATCCGG GCAAGAAGCT GCTGTTCATG GGCTGCGAGT TTGGGCAAGT GGGCGAATGG
AATCACGACG CATCACCCGA GTGGCATCTG CTGGATGACC CGCGGCACCG TGGCGTGCAG
CGGCTGGTGC ATGACCTCAA TGCGCTGTAC CGGAACGAAC CGTCATTGCA TGCGCGAGAC
ACCGCGCCCG AAGGGTTCAA CTGGGTGATT GGCGACGACC GCACCAACAG CGTGTTTGCG
TTCCTGCGGC TCGACGGCGA AGGGCGGCCG ATGCTCGTGG TGGCGAATAT GACGCCGGTG
CCGCGGGAGG GGTATCGCAT TGGCGTGCCG CCGGCGGACG GGGCCACGCA GTGGCGGGAG
GTGCTGAACA CGGATGCTGC CGTGTATGGC GGCAGCGATT TCGGGAACGG TGGGGCGGTG
GATGTGGACC ACGTGGCGGC GCATGGGCAG GAGCAGTCGT TGGTGTTAAG GCTGCCGCCG
TTGGGGGTTG TGGTTTTGAA GGTTTGA
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| Protein sequence | MTALDFATPT KTAAEPEAPV VLPPGLDQMQ VDALTHGRLG DPFAVLGPHR LDTEDGPRWV
VRAFYPGARR VQAIDSRGQI ITEMTPVGRT GLFHGPLRAD AQDVYGHPEL YRLRVIWPAG
TGHEAVQETE DPYAFGLLLG DLDMHLLNEG THWALASCLG AQAMRIDGIS GVRFAVWAPN
AQRVSVVGEF NQWDGRRHPM RLRHQAGVWE LFLPSGLGVG PGARYKFELI GADGRLMVKA
DPAARQTEPP PATASVVADP APLRWNDDAW MQTRAERQKP DAPISIYEVH AGSWLRDLED
GGRNLQWDEL ADRLIPYVTA LGFTHIELLP VAEHPFGGSW GYQPLGLFAP SARFGAPEAF
ARFVDRCHQA GLGVIVDWVP AHFPTDAHGL AQFDGTALYE HQDPREGFHQ DWNTLIYNFG
RNEVRGFLIA SGLEWLERFH IDGLRVDAVA SMLYRDYSRR AGEWVPNRYG GRENLEAVAF
IQKMNTVVHE RCPGAITIAE ESTAWPGVTA PVEFNGLGFD YKWNMGWMHD TLHYMQRDPV
YRQHHHDGMT FGLVYAFSEH FILPISHDEV VHGKGSLLGK MPGDEWQRLA NLRAYLAFMW
THPGKKLLFM GCEFGQVGEW NHDASPEWHL LDDPRHRGVQ RLVHDLNALY RNEPSLHARD
TAPEGFNWVI GDDRTNSVFA FLRLDGEGRP MLVVANMTPV PREGYRIGVP PADGATQWRE
VLNTDAAVYG GSDFGNGGAV DVDHVAAHGQ EQSLVLRLPP LGVVVLKV
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