Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic_3845 |
Symbol | |
ID | 6284943 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12J |
Kingdom | Bacteria |
Replicon accession | NC_010678 |
Strand | - |
Start bp | 93664 |
End bp | 94884 |
Gene Length | 1221 bp |
Protein Length | 406 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 642618345 |
Product | major facilitator superfamily MFS_1 |
Protein accession | YP_001892386 |
Protein GI | 187926041 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0254807 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 0.837631 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGGCCT CGCCTGCGTC CCCTACACCT TCCGCCACCA CTGCGCCCGC GGCCACCCAC AGTGACACGC AAGGGCTCAT CCGCCTGCTG ACTGCCGGTG CGGGTATCAG TGTGGCGTGC ATCTACCTGA ACCACCCGCT GCTCGGTCTG ATCAGCCGCG ACCTGAACAT CGCGCCAAAT GCGTTGGGCG TGCTGCCTAC GCTCACGGCG GCAGGCTACG CCAGCGGCAT CTTCTTCTTC GGGCCGTTGG GCGACCGCTA CGACCGCCGC CTCGTGATCC TGTGGAAGGC GGTCCTGCTG ACGCTGGCGC TCATCGGCAG CTGCCTGGCA CCCAACCTGC CGCTGCTGGC GGCCGCGGGC TTTGCGATCG GGCTGTCGGC CACCATCGCG CAGGACTTCG TACCCAGCGC CGCCGCCATC AGCACGGACC ACAACCGCAA TCGCAACATC GGCACGGTAA TGACCGGTCT TTTGATCGGC ATCGTCAGTT CACGCGTGTT CAGCGGCATC GTGGCAGACC ACTTCGGCTG GCGGGCGGCG TTTGGCGTGT CGGCAGTGGC CATCGTCGGG CTGGCTATCG CCGTGCGGGC ATCCCATTTT GGCGTGACAC CTGCCACGCG GCAGCCGTAC TTCACGTTGC TGCGCTCGCT GGGCACGCTG TTCATGCAGC ATCCGCGCCT GCGTGCGTCG GCGCTGACAC AGGCGTTCAT CGGTATCGCG TTCTCGGGAT TCTGGTCGAC GGTTGCGTTG CATCTGACGC GTTCCCTGGG GCTGTCGACG GGGCAAGCCG GCCTGCTGGG GCTGGCCGGC GCCGCAGGGG CGCTTGGCGC GAGTATTGCG GGCCGGCTGT CGGGTCGCGT GGCGCCGGGC CGCATCGCTG CCGGCGGCGC GCTGCTGATG GCGGTCACGT TTGCCTCGAT GGCGATGTTC CCGCAGTCGC TCATCGCCAT CGTGATCGGC ACCCTGGTGT TCGATGTGGG CGTGCAGGCG GCATTGGTTT CGCATCAGAC CATCATCTAC GCGCTGGCCC CCGAAGCGCG CAGCCGCATC AATGCAGTGT TCATGACCGC ATTGTTCATC GGCATGTCAG TAGGGGCTTA CGGTGCAAGC CTGGCGTGGA ATGCCGGACG CTGGTCGGGC CTGATGACGT TCTGCGCGTC GGCGTCCCTG GTGGCACTGG GCTTGCGGGC ACTGTTCAAC GCGCGGCTGG GCGCACACTG A
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Protein sequence | MSASPASPTP SATTAPAATH SDTQGLIRLL TAGAGISVAC IYLNHPLLGL ISRDLNIAPN ALGVLPTLTA AGYASGIFFF GPLGDRYDRR LVILWKAVLL TLALIGSCLA PNLPLLAAAG FAIGLSATIA QDFVPSAAAI STDHNRNRNI GTVMTGLLIG IVSSRVFSGI VADHFGWRAA FGVSAVAIVG LAIAVRASHF GVTPATRQPY FTLLRSLGTL FMQHPRLRAS ALTQAFIGIA FSGFWSTVAL HLTRSLGLST GQAGLLGLAG AAGALGASIA GRLSGRVAPG RIAAGGALLM AVTFASMAMF PQSLIAIVIG TLVFDVGVQA ALVSHQTIIY ALAPEARSRI NAVFMTALFI GMSVGAYGAS LAWNAGRWSG LMTFCASASL VALGLRALFN ARLGAH
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