Gene Rpic_3780 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_3780 
Symbol 
ID6284865 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010678 
Strand
Start bp20561 
End bp21865 
Gene Length1305 bp 
Protein Length434 aa 
Translation table11 
GC content63% 
IMG OID642618281 
ProductXanthine/uracil/vitamin C permease 
Protein accessionYP_001892323 
Protein GI187925978 
COG category[R] General function prediction only 
COG ID[COG2252] Permeases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0612559 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.111868 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCTGGC TTACGCGCTT TTTCAAGCTC AAGGAACATC AGACCGACGT GCGCACCGAG 
GTGCTCGCCG GCCTGACGAC GTTCCTCACA ATGGCGTACA TCGTCTTCGT GAACCCGAAC
ATCCTGGCCG ACGCGGGCAT GCCCCACGAC GCCGTGTTCG TGGCCACCTG CATCGCTGCC
GCCACCGGCA CGATCATCAT GGGGATGTAC GCCAACTATC CGATCGCCAT GGCGCCCGGC
ATGGGGCTGA ACGCCTATTT TGCGTATGCG GTGGTCAAAG GCATGGGCTT TACGTGGCAG
GCGGCGCTCG GCGCGGTGTT CATTTCGGGC TGCCTGTTCC TGCTGGTGAG CGTATTCCGC
ATCCGCGAAA TGATCGTCAA CGGGATTCCG CATTCGATCC GCGTGGCGAT CACGGCGGGA
ATCGGGCTGT TCCTGGGCAT CGTGTCGCTG CGGGGTGCCG GCCTGGTCGT CGGCAATCCG
GCGACGCTGG TTTCCCTGGG CGATGTGCAT CAGCCATCGG TCATTCTCGC CGTGATCGGC
TTCTTCCTGA TCGTGGCACT GGACCATCTG CGCGTGAAGG GCGCCATCCT GATCGGCATT
CTGGCCGTGA CGGCAGCGAG CTTCTTCTTT GCCGGCAACA CTTTCCACGG GGTGGTGTCG
ATGCCGCCGT CGCTGACGCC GACGCTGCTC CAGCTCGACA TCATGGGCGC GCTCTCGGTT
GGCATCCTCA ACGTGGTGCT GGTGTTCTTC CTGGTGGAGC TGTTTGACGC GACCGGCACG
CTGATGGGCG TGGCCAACCG TGCCGGTCTG CTCAAGCAGG GCAAGATGGA CCGTCTGAAC
AAGGCGTTGC TGGCGGACAG CACGGCCATC ATGGCCGGGT CGCTGCTGGG CACGTCGTCC
ACCACGGCCT ACATCGAAAG CGCGTCCGGG GTGCAAGCCG GAGGCCGCAC GGGCCTGACC
GCACTGACGG TTGCGGTGCT GTTTCTGCTG TGCCTGTTCT TCTCGCCGCT GGCCGGGGTG
GTACCGGCGT ACGCCACCGC GCCCGCGCTG CTGTACGTGT CCTGCCTGAT GCTGCGCGAA
CTGGTGGACC TGAACTGGGA GGACACCACC GAAGCCGTGC CGGCCGTGCT GACCGCGCTG
ATGATGCCGT TCACCTATTC GATTGCCAAT GGTGTCGCGT TTGGCTTCAT CACCTACTCG
GGCCTCAAGC TATTTACCGG CCGTGCCCGC GAGGTGCCGA TCATCGTGTG GATCATCTCG
GCCGTGTTTC TGTTCCGATT CTTCTATCTG TCGGGCGGAC ACTGA
 
Protein sequence
MTWLTRFFKL KEHQTDVRTE VLAGLTTFLT MAYIVFVNPN ILADAGMPHD AVFVATCIAA 
ATGTIIMGMY ANYPIAMAPG MGLNAYFAYA VVKGMGFTWQ AALGAVFISG CLFLLVSVFR
IREMIVNGIP HSIRVAITAG IGLFLGIVSL RGAGLVVGNP ATLVSLGDVH QPSVILAVIG
FFLIVALDHL RVKGAILIGI LAVTAASFFF AGNTFHGVVS MPPSLTPTLL QLDIMGALSV
GILNVVLVFF LVELFDATGT LMGVANRAGL LKQGKMDRLN KALLADSTAI MAGSLLGTSS
TTAYIESASG VQAGGRTGLT ALTVAVLFLL CLFFSPLAGV VPAYATAPAL LYVSCLMLRE
LVDLNWEDTT EAVPAVLTAL MMPFTYSIAN GVAFGFITYS GLKLFTGRAR EVPIIVWIIS
AVFLFRFFYL SGGH