| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic_3770 |
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| Symbol | |
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| ID | 6285437 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12J |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010678 |
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| Strand | + |
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| Start bp | 8263 |
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| End bp | 9765 |
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| Gene Length | 1503 bp |
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| Protein Length | 500 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642618271 |
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| Product | RNA polymerase factor sigma-54 |
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| Protein accession | YP_001892313 |
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| Protein GI | 187925968 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0528545 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.0523944 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTCAAGG CCGCTCTGGA AATGCGTGCG AAGCAGCATC TCGCGCTGAC GCCGCGGCTG
CAGCAGTCCG TCAAGCTGCT GCAGTTATCC GCAACCGAAT TTGCGCAGGA AATGCAAGAA
GCGCTCGCAA GCAACCCGTT CCTGGAGGAG GTCGAGCAAG AAGCCGGTGC GCAGCCGGAT
GCGACCCGTG CGAACGACCT GCCCGGCCCG GCAGACCTGG ATGGCAGCGG CACCGACCAC
ACGCCGTCCG AAGCATTGCC GCTGGAAACC ACCACGAGCG CCATCGAGAC CGACCCGGCG
CTTGCCACAG CAGATGAGTT TCCTGCCGAT TTCGGCACGT ACTACAGCCA TGGCGGCGCA
CACCATGGCG ACGGCGAAGA CAGCGACATT GGCGAATGGG TGCACGCCAC GCCAAGCCTG
CGCGAACATC TGCACCAGGA GTTGCGCAGC TACCGCCTGT CGCAGCGTGA TTGCCTGCTG
GGGCAGACGG TGATCGAGGC GCTTGACGAC GACGGCTACC TGCGCCAACT GCTCTCCGAA
CTCATTCCGC TTGCGCCGGT GGAACCTCCG CCAACCGAGA AGGAAATGCA GATCGCCCTG
GCGCTCGTGC AGAGCCTCGA TCCCCCGGGC GTGGCGGCGC GCGACCTGTC TGAATGCCTG
CGTCTGCAGA TCGAGGCGCG GCCCGCCGAC ACCGAGGCCG AGGAGCGCAT CCAGGAGGTC
GCCCACGACA TCGTGCGCAG CCACCTGCCC CGCCTCGCCA AGCGCGAATT CACACAGATG
CGCCGCGCGC TCGGCTGCAC GGAAGATGAG CTTCGCGATG CCTGCGCGCT CATTCGCATG
CTCGACCCAC GCCCGGGACT GCGCTTCTCG CAAGCACACG CGGGCTACAT CGTGCCCGAT
GTGATCGTCG CCAAGATCCG GGGCAAGTGG ATCGCGGTGA CCAACCCGGC GGTAGCGCCC
TGCGCGCGCA TCAACAAGGT CTATGCCGAA CTGTTTGCCC AGACGCGCGG CTACCATCGC
ACACCGCTGG CGCACCAGCT GCAGGAAGCG CGCTGGCTCA TCCGCAACGC GCAGCAGCGC
TTCGCCACGA TCCAACGCGT GGCGGAGGCG ATCGTCGCGC ATCAGAAGCA TTTCCTGGAG
TACGGCGAAG TGGCCATGAA ACCGCTGGTG CTGCGCGATG TGGCCGAAGA ACTGGGCTTG
CATGAGTCCA CCATTTCACG CGCGACCGGT AACAAGTACA TGGCCACGCC GCGCGGTATC
TTCGAATTCA AGTATTTCTT CTCCCGGCAA CTGGCCACCG ACACGGGCGG CGCATGCTCG
GCTGCCTCGG TGCGGGCGCT GCTCAAGGAG ATGATCGAGG CCGAAGACGC CGACGCACCG
CTCTCCGACG TGTCGCTGGC CAAGATGCTG GCCGAGCAGG GTGTGATCGT CGCGCGCCGC
ACGGTCGCCA AGTACCGTGG GCTGATGCGC ATTGCGCCGG CGGAAATGCG CCGCCAGGTC
TGA
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| Protein sequence | MVKAALEMRA KQHLALTPRL QQSVKLLQLS ATEFAQEMQE ALASNPFLEE VEQEAGAQPD
ATRANDLPGP ADLDGSGTDH TPSEALPLET TTSAIETDPA LATADEFPAD FGTYYSHGGA
HHGDGEDSDI GEWVHATPSL REHLHQELRS YRLSQRDCLL GQTVIEALDD DGYLRQLLSE
LIPLAPVEPP PTEKEMQIAL ALVQSLDPPG VAARDLSECL RLQIEARPAD TEAEERIQEV
AHDIVRSHLP RLAKREFTQM RRALGCTEDE LRDACALIRM LDPRPGLRFS QAHAGYIVPD
VIVAKIRGKW IAVTNPAVAP CARINKVYAE LFAQTRGYHR TPLAHQLQEA RWLIRNAQQR
FATIQRVAEA IVAHQKHFLE YGEVAMKPLV LRDVAEELGL HESTISRATG NKYMATPRGI
FEFKYFFSRQ LATDTGGACS AASVRALLKE MIEAEDADAP LSDVSLAKML AEQGVIVARR
TVAKYRGLMR IAPAEMRRQV
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