| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_7228 |
|---|
| Symbol | |
|---|
| ID | 6277859 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | + |
|---|
| Start bp | 3613220 |
|---|
| End bp | 3615106 |
|---|
| Gene Length | 1887 bp |
|---|
| Protein Length | 628 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642618248 |
|---|
| Product | TRAP dicarboxylate transporter, DctM subunit |
|---|
| Protein accession | YP_001890884 |
|---|
| Protein GI | 187921852 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component
[COG3090] TRAP-type C4-dicarboxylate transport system, small permease component |
|---|
| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 53 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGAATC ACGCATTGAA TCCGGCGGAC GCGGGCGTGC CGTTGCACGC GGCGAGCATG
CCGCGCCGCT GGTTGAGGAG CTTCGATCGT GGTCTGATCG CGCTCGTCGA AGTGTGCGCG
GCGGCGCTGC TCATGATGGA AATCGTCGTG ATGTTCGCGG GCGTGGTGTG CCGCTACGTG
CTGCATCAGC CGCTCGTCTG GTCGGATGAA CTGGCCGGCA TTCTGTTCCT GTGGCTCGCC
ATGCTTGGCG CCGTGCTCGC GTTGCGGCGC GGCGAACATA TGCGGATGAC GGCACTCGTC
AGCCGCCTCT CGCCGCAGCG GCGCGCATTC GTCGATACGC TGGCGATCGC CGCGTCGATC
GCATTGCTTG CGCTGTTGAT CGCCCCTGCG TACGACTATG CGTCCGGCGA GGCGGCGATC
GTCACGCCCG CCCTGCAGAT CAGCAACGCG TGGCGCGCGC TCGCTTTGCC CATCGGCGCG
GCGCTCATGC TGCTGGTCGG CATGATTCGT CTTGCCCAGG TGAGCCGCGT GCGCGACGTC
GTGATCGTGC TCGCCATTAC CGCTGTATTG GCCGCGGTCG CCGTGTTCGC CGGGCCGTGG
TTTCAGACGC TCGGCAAACC CAATCTCGTG ATCTTTTTCG TCGGCGTGGT GGCGATCGGG
ATTTTTTCGG GCGTGCCGAT CGGGTTTTCG TTTGCGCTTG CCACGTTCGG CTATCTGGGC
CTCTCGACCT TTACGCCGCT CGAAGTCGTG GTCGGCCGCA TGGACGAAGG CATGTCGCAT
CTCGTGCTGC TCGCCGTGCC GCTCTTCGTG TTCCTCGGCT TATTGATTGA AATGACCGGC
ATGGCGCGCG CCATGATCGA GTTTCTCGCG AGCCTCGTTG GTCATGTGCA TGGTGGTTTG
TCGTTCGTGC TGATCGGCGC GATGTACCTG GTCTCGGGCA TCTCCGGCTC GAAAGTGGCC
GACATGGCGG CCATCGCACC GGTGCTGTTT CCGGAGATGA AGAAACGCGG CGCTTCCGAA
GGCGATCTGG TCGCGCTGCT CGCCACGACC GGTGCACAAA GCGAAACCAT TCCGCCGAGC
ATCGTGTTGA TCACGATCGG TTCGGTGACG GGTCTGTCGA TATCAGCGCT CTTCACCGCG
GGCATGCTGC CGGGCGCCGT GCTCGCGCTG ATTCTGTGCG TGGTGGTGTG GTGGCGTTAT
CGCAAGGAAG ACTTGAGCGG CGCGCAGCGT TTCAGCAAGC GGCAGATCGG GCGATTGTTC
GTCGTGTCGC TTCCGGCGCT GGCGTTGCCT TTCGTGATTC GCATGGCCGT GGTCGAAGGC
GTGGCGACAG CGACGGAGGT ATCGACCATC GGCATTGCTT ACTCGATGCT GATCGGCCTC
GTGGTGTATC GCCGTTTCGA ATGGCGGCGG CTCGGCCGCA TGCTGGTGGA TGCAGCGACC
TTGTCGGGCG CGATTCTTTT TATTATCGGC TGCGCGACGG CGATGGCTTG GGCGCTCACG
CAATCCGGCT TTTCTCAGGA CCTAGCGCAA CTCATGGGCT CGATGCCGGG CGGCGCGTAC
GGTTTTCTCG CGGTGTCGAT CGTGGTGTTC GTGATGCTCG GCAGCGTGCT CGAAGGAATT
CCCGCCATTG TGCTGTTCGG GCCGTTGCTG TTTCCCATTG CGCGGCTCGC GGGCGTGCAT
GAAGTGCATT ACGCGATCGT CGTGATTCTG TCGATGGGCG TGGGCCTCTT CTCGCCGCCG
TTCGGGGTCG GCTACTACTC GGCGTGCGCG ATCAGCAAGG TCAATCCCGA TGCGGGCATT
CGTCCGATTG TCGGCTATAT GGGCGCGTTG ATCGTCGGCC TGATCGTGGT CGCGGCGATT
CCCTGGATTT CGATCGGGTT TCTTTAA
|
|---|
| Protein sequence | MSNHALNPAD AGVPLHAASM PRRWLRSFDR GLIALVEVCA AALLMMEIVV MFAGVVCRYV
LHQPLVWSDE LAGILFLWLA MLGAVLALRR GEHMRMTALV SRLSPQRRAF VDTLAIAASI
ALLALLIAPA YDYASGEAAI VTPALQISNA WRALALPIGA ALMLLVGMIR LAQVSRVRDV
VIVLAITAVL AAVAVFAGPW FQTLGKPNLV IFFVGVVAIG IFSGVPIGFS FALATFGYLG
LSTFTPLEVV VGRMDEGMSH LVLLAVPLFV FLGLLIEMTG MARAMIEFLA SLVGHVHGGL
SFVLIGAMYL VSGISGSKVA DMAAIAPVLF PEMKKRGASE GDLVALLATT GAQSETIPPS
IVLITIGSVT GLSISALFTA GMLPGAVLAL ILCVVVWWRY RKEDLSGAQR FSKRQIGRLF
VVSLPALALP FVIRMAVVEG VATATEVSTI GIAYSMLIGL VVYRRFEWRR LGRMLVDAAT
LSGAILFIIG CATAMAWALT QSGFSQDLAQ LMGSMPGGAY GFLAVSIVVF VMLGSVLEGI
PAIVLFGPLL FPIARLAGVH EVHYAIVVIL SMGVGLFSPP FGVGYYSACA ISKVNPDAGI
RPIVGYMGAL IVGLIVVAAI PWISIGFL
|
|---|
| |