| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_7026 |
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| Symbol | |
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| ID | 6279028 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | + |
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| Start bp | 3405749 |
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| End bp | 3406687 |
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| Gene Length | 939 bp |
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| Protein Length | 312 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642618049 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_001890685 |
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| Protein GI | 187921653 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.398098 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.000000633587 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATGTGC CCGTGGACTC GTTGAGCGAT CTGGTGGTCG AACGTGTCGG TTTCGGCATC
TTCGTGCTGG ACCGCGACAT GAACGTGCTC ATGTGGAATC GCTTCATGCA GGATCACAGC
GGATTGACAC CGGACCAGGT GGTCGGCAGG TCGCTGTACA CGCATTTTCC GGAATTGCCG
CGCGTGTGGC TGTCGCGCAA GATCGAAAGC GTGTTTCAGC TCGGCAGCTT TGCGTTCAGT
TCGTGGGAAC AGCGCCCGTA TCTCTTCAAG TTCGATCACG ACCGGCCGAT TACCGGCGGC
GTCGACTTCA TGCAGCAGGA TTGCACCTTC ATGCCGCTCA TGCGCGAGCG CGAAGTGGTG
GCCGTGTGCG TCACCATTTC CGACGTCACG CACGTGAGCA TCGTGCAGCG CGAACGCGAG
GAAGCGGTTG CGAAGCTGCA GGAATATGCC GATCGCGACG GCCTGACGGG CATCGCCAAC
CGCCGTTTCT TCGAAGCGCG CCTGCGCGAC GAATACACGC GCTGGCAGCG CTACGGCGGC
GATATGTCGG TGCTGCTGTT CGATCTCGAT CACTTCAAGA AAATCAACGA CCAGTTCGGC
CACGGTGTCG GCGACACGGT GTTGCGCGTG ATGGCGCAGC GCGTCGCCGA GGTGGTACGG
GCGCAGGACA CCTTCGGGCG CTTCGGCGGC GAGGAGTTCG CGTTGCTGCT GCCGTGCACG
CCGCTCGAGG ACGCGATGCG CGTCGCGGAA AAAATCCGCT GCACGATTGC CGACACGCCG
GTCGAAGTGC AGGGCACTTG CGTGCCGGTG ACGGCGAGCG TCGGCGGCGC GTCGGCGCGG
GTCGGCGTGC CTTCGTACGA CGTGCTCATC AACGAGGCCG ACGCGGCGCT CTATAGCGCG
AAGCGGCAAG GACGCAACCG CTCGGTCGCG TTCGTCTGA
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| Protein sequence | MNVPVDSLSD LVVERVGFGI FVLDRDMNVL MWNRFMQDHS GLTPDQVVGR SLYTHFPELP
RVWLSRKIES VFQLGSFAFS SWEQRPYLFK FDHDRPITGG VDFMQQDCTF MPLMREREVV
AVCVTISDVT HVSIVQRERE EAVAKLQEYA DRDGLTGIAN RRFFEARLRD EYTRWQRYGG
DMSVLLFDLD HFKKINDQFG HGVGDTVLRV MAQRVAEVVR AQDTFGRFGG EEFALLLPCT
PLEDAMRVAE KIRCTIADTP VEVQGTCVPV TASVGGASAR VGVPSYDVLI NEADAALYSA
KRQGRNRSVA FV
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