Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_6992 |
Symbol | |
ID | 6279955 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010676 |
Strand | - |
Start bp | 3372200 |
End bp | 3373447 |
Gene Length | 1248 bp |
Protein Length | 415 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 642618015 |
Product | efflux transporter, RND family, MFP subunit |
Protein accession | YP_001890651 |
Protein GI | 187921619 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 54 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCACTC TCTCCATCGC GGTCGAACGG TCGCGGCGTG CGCCCGCGTT CACGCTTCTT GCCGCAGCCG TCGCCGCTGC CGCGTTCATG TTATCGGGTT GCGGCGAACA GGCGTCTCAC GGGCCGATGC AATCGGTTCC CGAAGTCGGC GTAGAAACGA TCACGCCGCA TACCGTCGTG TCGAGCACTG AATTGTCCGG GCGGCTCTCG GCGATCCGCG TCGCGGAAGT CAGGCCGCAG GTTGAAGGCA TCGTCAGAAA GCGCCTCTTC ACCGAAGGCT CGCAAGTCGC GGCCGGCGCC GTGCTGTATC AGATCGACGC GTCCAGTTAT CAAGCCGCCT ACGACCAGGC GGTCGGCACG CTGGCCAAAG CCGTGGCGAC GGCCAGCGCC GCGCAGACCA AGGCCGCGCG CTACGCCGAG CTCTCGAAGA TCCAGGGCGT CAGCCGCCAG GACTACGACG ACGCCGTCGC CGCATGGGAC GAAGCAAAAG CCGACGTGGT CGCCGATCGC GCCGCATTGA AGACCGCGGC GATCAACCTC GGTTACACGA AGGTGGTGGC GCCGATCGCG GGCCGCATCG GCAAATCGAG CGTGACCGAA GGCGCGCTCG TGACCGCCGA ACAGACCACC GCGCTCGCAA CCGTGCAAGC AACCACGGAA ATGTATCTCG ACGTCACGCG CTCTTCGGCG GATTGGCTGC GCTTGCAGAA GGAATTCGCG AGCGGGCAAT TGCAGCAGTC TGGCACCGAC GGCGCCGTCG TTCATCTGGT GATGGAAGAC GGCAGCACGT ATGCGCAACC CGGCAAGCTG CTGTTCTCCG ATATCACCGT CGATGCCACC ACCGGTTCGG TGACCTTGCG CTGCGTGTTT CCCAATCCGG ACGGCGTGTT GTTGCCCGGC ATGTTCGTGC GCGCGCGACT CGAAGAAGGC GTGAACCAGC AAGCGATCAC GGTGCCGCAA CTCGCGGTCT CGCGGGCGTC GGACGGCTCG GCCAGCGTGC TCACTGTCGG CGCCGACAAC AAGGTCGCGA AAACCGCCGT GACCGCCGAC ACCGCATCAG GCAGCGACTG GCTCGTCACG AGCGGCCTCA AGGCGGGCGA TCGCGTGATC GTCGCGGGCT CGCAGAATGC GCGCGCCGGT GCGGTCGTCA AGCCGGTCGA AAGTCCCGCT GCGGCGGACG CATCGGGTGC ATCGAGCGCA TCGGGCACGC CCGCCACCGC GGACAACACG TCGGCAGCAC ATAGTTAA
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Protein sequence | MPTLSIAVER SRRAPAFTLL AAAVAAAAFM LSGCGEQASH GPMQSVPEVG VETITPHTVV SSTELSGRLS AIRVAEVRPQ VEGIVRKRLF TEGSQVAAGA VLYQIDASSY QAAYDQAVGT LAKAVATASA AQTKAARYAE LSKIQGVSRQ DYDDAVAAWD EAKADVVADR AALKTAAINL GYTKVVAPIA GRIGKSSVTE GALVTAEQTT ALATVQATTE MYLDVTRSSA DWLRLQKEFA SGQLQQSGTD GAVVHLVMED GSTYAQPGKL LFSDITVDAT TGSVTLRCVF PNPDGVLLPG MFVRARLEEG VNQQAITVPQ LAVSRASDGS ASVLTVGADN KVAKTAVTAD TASGSDWLVT SGLKAGDRVI VAGSQNARAG AVVKPVESPA AADASGASSA SGTPATADNT SAAHS
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